Table 3. RNA-seq data analyzed in this study.
| Condition | GEO accession number | Reference |
|---|---|---|
| Ascodesmis nigricans | ||
| Vegetative mycelium | GSE92315 | This study |
| Sexual myceliuma | GSE92315 | This study |
| Protoapotheciab | GSE92315 | This study |
| Pyronema confluens | ||
| Vegmixc | GSE41631 | Traeger et al. (2013) |
| DDc | GSE41631 | Traeger et al. (2013) |
| Sexual myceliuma | GSE41631 | Traeger et al. (2013) |
| Protoapotheciab | GSE61274 | Murat et al. (2018) |
| Sordaria macrospora | ||
| Vegetative mycelium | GSE33668 | Teichert et al. (2012) |
| Sexual myceliuma | GSE33668 | Teichert et al. (2012) |
| Wild-type protoperitheciab | GSE33668 | Teichert et al. (2012) |
For each condition, two independent biological replicates were analyzed, except for P. confluens protoapothecia, where three independent biological replicates were analyzed. GEO, Gene Expression Omnibus; DD, constant darkness.
a
Sexual mycelium represents mycelia including embedded developing fruiting bodies.
b
Protoapothecia and protoperithecia are young fruiting bodies isolated by laser microdissection.
c
Conditions vegmix (combined RNA from several growth conditions that allow only vegetative growth) and DD (growth in darkness) represent mycelia that cannot develop sexual structures.