Table A1.
Repeatability across results for the Bayesian sparse linear mixed model (BSLMM).
| 10 M Iterations Seeds 1–10 |
10 M Iterations Seeds 11–20 |
20 M Iterations Seeds 1–10 |
30 M Iterations Seeds 1–10 |
|||||
|---|---|---|---|---|---|---|---|---|
| CHR | Sugg | Sign | Sugg | Sign | Sugg | Sign | Sugg | Sign |
| 1 | 2 | 0 | NA | NA | NA | NA | NA | NA |
| 1 | 1 | 0 | NA | NA | 1 | 0 | 4 | 0 |
| 2 | 38 | 27 | 5 | 1 | 32 | 2 | 5 | 1 |
| 3 | NA | NA | NA | NA | 1 | NA | ||
| 4 | 54 | 4 | 25 | 2 | 3 | 0 | 5 | 2 |
| 6 | 68 | 4 | 8 | 1 | 11 | 2 | 11 | 2 |
| 7 | 14 | 0 | 10 | 0 | 5 | 0 | 8 | 0 |
| 8 | 6 | 0 | NA | NA | NA | NA | NA | NA |
| 9 | NA | NA | 2 | 0 | NA | NA | NA | NA |
| 14 | NA | NA | NA | NA | 1 | 0 | NA | NA |
| 15 | 6 | 1 | 5 | 1 | 5 | 2 | 12 | 1 |
| 16 | NA | NA | NA | NA | 2 | 0 | NA | NA |
| 18 | NA | NA | 1 | 0 | NA | NA | NA | NA |
| 19 | NA | NA | NA | NA | NA | NA | 3 | 0 |
| 20 | NA | NA | NA | NA | NA | NA | 1 | 0 |
| 22 | NA | NA | NA | NA | 4 | 0 | NA | NA |
| 23 | NA | NA | 11 | 0 | NA | NA | NA | NA |
| 24 | NA | NA | 4 | 1 | 16 | 0 | NA | NA |
Repeatability across results for the Bayesian sparse linear mixed model (BSLMM) using the max gamma values from 10 million (M) iterations with seeds 1–10, 10 M iterations with seeds 11–20, 20 M iterations with seeds 1–10, and 30 M iterations with seeds 1–10 for adiponectin concentrations in the Morgan horses. Regions which are highlighted in yellow indicate those which would have been identified as a region of interest (contained a minimum of five SNPs exceeding the suggestive threshold, with at least one SNP exceeding the threshold for genome wide significance). Abbreviations: Sugg (total number of SNPs which exceeded the suggested threshold for genome-wide significance), Sign (total number of SNPs which exceed the threshold for genome-wide significance).