. 2019 Nov 1;10(11):881. doi: 10.3390/genes10110881

Table 2.

Genes present in the complete chloroplast genomes of five accessions of two weedy species of Sonchus: S. asper and S. oleraceus.

Category	Gene Name
Photosystem I	psaA, psaB, psaC, psaI, psaJ, ycf3 ^b, ycf4
Photosystem II	psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ
Cytochrome b6/f complex	petA, petB ^a, petD, petG, petL, petN
Cytochrome C synthesis	ccsA
ATP synthase	atpA, atpB, atpE, atpF ^a, atpH, atpI
RuBisCO	rbcL
NADH oxidoreductase	NdhA ^a, ndhB ^a,c, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
Large subunit ribosomal proteins	rpl2 ^a,c, rpl14, rpl16^a, rpl20, rpl22, rpl23^c, rpl32, rpl33, rpl36
Small subunit ribosomal proteins	rps2, rps3, rps4, rps7^c, rps8, rps11, rps12 ^b,^c,d, rps14, rps15, rps16 ^a, rps18, rps19
RNA polymerase	rpoA, rpoB, rpoC1 ^a, rpoC2
Translation initiation factor	infA
Others	accD, cemA, clpP ^b, matK
Unknown function genes (conserved reading frames)	ycf1, ycf 2 ^c, ycf15 ^c
Ribosomal RNAs	rrn5 ^c, rrn16 ^c, rrn23 ^c
Transfer RNAs	trnA-UGC ^a,c, trnC-GCA, trnC-ACA ^a, trnD-GUC, trnE-UUC, trnE-UUC ^a,c, trnF-GAA, trnG-GCC, trnG-UCC ^a, trnH-GUG, trnK-UUU ^a, trnL-CAA^c, trnL-UAA ^a, trnL-UAG, trnM-CAU, trnM-CAU, trnM-CAU ^c, trnN-GUU ^c, trnP-UGG, trnQ-UUG, trnR-ACG ^c, trnR-UCU, trnS-CGA ^a, trnS-UGA, trnS-GGA, trnT-GGU, trnT-UGU, trnV-GAC ^c, trnW-CCA, trnY-GUA

^a Gene containing a single intron. ^b Gene containing two introns. ^c Two gene copies in IRs. ^d Trans-splicing gene