Table 1.
The performances of HiCNN2-1, HiCNN2-2, HiCNN2-3, HiCNN, and HiCPlus for recovering significant interactions detected by Fit-Hi-C (with three different q-values) that are in common with 306 Hi-C peaks detected by HiCCUPS on chromosome 17 in human GM12878. The best overlapping numbers are highlighted (bold numbers).
| HiCCUPS | q-Value | High Resolution | HiCNN2-3 | HICNN2-2 | HICNN2-1 | HiCNN | HiCPlus |
|---|---|---|---|---|---|---|---|
| 306 | <1 × 10−6 | 134 | 122 | 114 | 121 | 104 | 112 |
| <1 × 10−3 | 177 | 164 | 158 | 165 | 156 | 160 | |
| <0.05 | 203 | 198 | 193 | 199 | 200 | 198 |