Table 4.
Volunteer |
Pre-vaccination full TCR repertoire |
Post-vaccination full TCR repertoire |
Post-vaccination activated TCR repertoire |
||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Identified TCRs |
% epitope- specific TCRs |
Adjusted p-value enrichment analysis vs. background repertoire |
Identified TCRs |
% epitope- specific TCRs |
Adjusted p-value enrichment analysis vs. background repertoire |
Adjusted p-value enrichment analysis vs. pre-vaccination repertoire |
Identified TCRs |
% epitope- specific TCRs |
Adjusted p-value enrichment analysis vs. background repertoire |
Adjusted p-value enrichment analysis vs. pre-vaccination repertoire |
|
1 | 35 | 0.010813 | 0.621 | 32 | 0.009094 | 0.935 | 0.857 | 4 | 0.017189 | 0.265 | 0.316 |
2 | 48 | 0.012999 | 0.384 | 65 | 0.015565 | 1.56e-03 | 0.212 | 5 | 0.028991 | 0.056 | 0.116 |
3 | 41 | 0.012539 | 0.384 | 87 | 0.025967 | 9.29e-14 | 7.86e-09 | 181 | 0.550922 | 1.86e-239 | 5.00e-222 |
4 | 23 | 0.009778 | 0.856 | 34 | 0.012084 | 0.299 | 0.231 | 21 | 0.103128 | 2.56e-14 | 1.67e-14 |
5 | 8 | 0.012759 | 0.621 | 63 | 0.020710 | 7.22e-07 | 9.93e-04 | 71 | 0.423527 | 7.50e-87 | 1.56e-79 |
6 | 41 | 0.012111 | 0.384 | 32 | 0.012065 | 0.299 | 0.684 | 8 | 0.040422 | 2.31e-03 | 7.45e-03 |
7 | 11 | 0.006771 | 0.964 | 11 | 0.005344 | 0.992 | 0.857 | 2 | 0.011544 | 0.517 | 0.369 |
8 | 22 | 0.008229 | 0.964 | 27 | 0.010866 | 0.539 | 0.212 | 2 | 0.011869 | 0.517 | 0.404 |
9 | 13 | 0.006451 | 0.964 | 18 | 0.008163 | 0.938 | 0.284 | 4 | 0.021606 | 0.176 | 0.060 |
The table represents the adjusted p-values (Benjamini-Hochberg adjusted p-values for 9 tests) associated with the LLWNGPMAV-specific enrichment analyses for both full (i.e., derived from PBMC) pre- and post-vaccination TCR repertoires and the post-vaccination activated TCR repertoire. In addition, the number of identified specific TCRs and the percentage of identified specific TCRs are given.