Table 1.
Similarity of VAR2CSAM200101 domains to different PfEMP1 from reference strains.
| Domain_ID | Query_Domain_ID* (Ref: PfEMP1) | Score_per_AA | Domain cassette | UPS | Edit_Dist |
|---|---|---|---|---|---|
| NTS | NTSpam (HB3:HB3var2csaA) | 4.804 | UPS_E | 4 | |
| DBL1X | DBLpam1 (PFCLIN:PFCLINvar72) | 4.834 | DC2 | UPS_E | 45 |
| DBL2X | DBLpam2 (IT4:IT4var04) | 4.357 | DC2 | UPS_E | 75 |
| ID2 | CIDRpam (IGH:IGHvar41) | 5.044 | DC2 | UPS_E | 19 |
| DBL3X | DBLpam3 (IGH:IGHvar41) | 5.227 | DC2 | UPS_E | 17 |
| DBL4ε | DBLepam4 (IT4:IT4var04) | 4.831 | DC2 | UPS_E | 39 |
| DBL5ε | DBLepam5 (RAJ116:RAJ116var25) | 4.755 | DC2 | UPS_E | 38 |
| DBL6ε | DBLe10 (RAJ116:RAJ116var25) | 3.506 | DC2 | UPS_E | 109 |
| DBL7ε | DBLe8 (DD2:DD2var28) | 5.519 | DC3 | UPS_B | 0 |
| ATS | ATSpam1 (3D7:PFL0030c) | 4.382 | UPS_E | 68 |
ID Identity, AA amino acid, Edit_Dist edit distance, *Domain_ID nomenclature as defined in VarDom 1.0 server is used