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. 2019 Dec 5;7:e8192. doi: 10.7717/peerj.8192

Figure 1. The workflow of TEffectR package.

Figure 1

The package contains six core functions for the identification of the potential links between TEs and nearby genes at genome-wide scale. TEffectR requires two inputs provided by the user: (i) a raw gene count matrix and (ii) genomic alignments of sequencing reads in BAM file format.