Table 2. Pyrosequencing PCR primer sequences and conditions.
ProbeID | Gene | Primers | Tm (°C) |
---|---|---|---|
cg10633981 | C11orf58 | Forward: 5′-TAGAAATAATTGGTGAGGGTAGGA-3′ | 58 |
Reverse: 5′-ACTTCCTAATCTATCAATTCAATATCATAA-3′ – Biotin | 58 | ||
Sequencing: 5′-AGGGTTGGGAATTTT-3′ | 44 | ||
cg19933985 | IGR | Forward: 5′-TTGGAATTTAGGTGAAGATGTT-3′ – Biotin | 56 |
Reverse: 5′-CATTAACTAAACCATCATTATACAACC-3′ | 58 | ||
Sequencing: 5′-ACCATCATTATACAACCT-3′ | 44 | ||
cg11049075 | HDAC5 | Forward: 5′-TTTTTTAAAGGGATGTGAGTAGGAAGAATT-3′ | 61 |
Reverse: 5′-CCCAAATAACTACAAAAACAAAAATTTACT-3′ – Biotin | 59 | ||
Sequencing: 5′-ATTTTTAAATATATAATTAAGATGT-3′ | 38 | ||
cg24449302 | MAP2K1 | Forward: 5′-GGTATTTGGTTTGGAGAGTTTAT-3′ | 57 |
Reverse: 5′-CTTTCCACACTCCCACTC-3′ – Biotin | 57 | ||
Sequencing: 5′-GGATTTAGTTTTTAGGTAGT-3′ | 39 | ||
cg09844907 | MPV17L | Forward: 5′-GGGTTTTTTTAGTTTTTAGTAGTTATTGT-3′ | 57 |
Reverse: 5′-CCTTCTACCTCTATAACTTTACCTATTCT-3′ – Biotin | 60 | ||
Sequencing: 5′-TGTATTTGTTTTTTTTAGAAGTTT-3′ | 44 | ||
cg17479131 | LOC401431 | Forward: 5′-GAATTAGAAAGTATATGATGGAGGTTTTAG-3′ | 58 |
Reverse: 5′-ATATAAACCTCTTAAAACAAACTACACT-3′ – Biotin | 57 | ||
Sequencing: 5′-AAGAGTATATATGAGTTGATATAG-3′ | 44 |
Tm = temperature (annealing).