Table 3. Correlation between genome-wide and pyrosequencing methylation data.

		Δβ		Pyrosequencing	Mann-Whitney U test	Linear regression
ProbeID	Gene	ChAMP	RnBeads	Log2(meancontrol/meancase)	p-value	R2	p-value
cg10633981	C11orf58	-0.167	-0.166	0.043*	< 0.0001	0.319	< 0.0001
cg19933985	IGR	-0.145	-0.148	-0.072	< 0.0001	0.675	< 0.0001
cg11049075	HDAC5	-0.090	-0.099	-0.040	0.0004	0.130	0.016
cg24449302	MAP2K1	0.063	0.088	0.178	0.0001	0.277	0.0002
cg17479131	LOC401431	0.145	0.133	-0.352*	0.002	0.021	0.3433
cg09844907	MPV17L	0.048	0.140	0.095	0.5651	0.045	0.1731

^*Discordant.