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. 2019 Sep 24;28(13):3510–3522.e5. doi: 10.1016/j.celrep.2019.08.065
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

PE anti-mouse Ly6A/E (Sca-1) (Clone D7) BioLegend Cat#108107: RRID:AB_313344
BV875 anti-mouse Ly6A/E (Sca-1) (Clone D7) BioLegend Cat#108139: RRID:AB_2565957
APC anti-mouse CD117 (c-kit) (Clone 2B8) BioLegend Cat#105812; RRID:AB_313221
BV605 anti-mouse CD150 (Clone TC15-12F12.2) BioLegend Cat#115927; RRID:AB_11204248
APC/Cy7 anti-mouse CD48 (Clone HM48-1) BioLegend Cat#103431: RRID:AB_2561462
PE/Cy7 anti-mouse B220 (Clone RA3-6B2) BioLegend Cat#103221: RRID:AB_313004
BV785 anti-mouse B220 (Clone RA3-6B2) BioLegend Cat#103245: RRID: AB_11203538
BV605 anti-mouse CD19 (Clone 6D5) BioLegend Cat#115539: RRID:AB_11203538
BV785 anti-mouse CD19 (Clone 6D5) BioLegend Cat#115543: RRID:AB_11218994
BV605 anti-mouse CD11b (Clone M1/70) BioLegend Cat#101237: RRID:AB_11126744
PE/Cy7 anti-mouse CD11b (Clone M1/70) BioLegend Cat#101215: RRID:AB_312798
Alexa Fluor® 700 anti-mouse Gr-1 (Clone RB6-8C5) BioLegend Cat#108421: RRID:AB_493728
PE anti-mouse Gr-1 (Clone RB6-8C5) BioLegend Cat# 108407: RRID:AB_313372
PE/Cy7 anti-mouse Gr-1 (Clone RB6-8C5) BioLegend Cat#108415: RRID:AB_313380
PE/Cy7 anti-mouse CD3e (Clone 145-2C11) BioLegend Cat#100319: RRID:AB_312684
Alexa Fluor® 647 anti-mouse CD3e (Clone 145-2C11) BioLegend Cat#100324: RRID:AB_492861
PE/Cy7 anti-mouse NK-1.1 (Clone PK136) BioLegend Cat#108713: RRID:AB_389363
PE/Cy7 anti-mouse TER-119 (Clone TER-119) BioLegend Cat#116221: RRID:AB_2137789
PE/Cy7 anti-mouse CD45 (Clone 30-F11) BioLegend Cat#103113: RRID:AB_312978
TruStain FcX (anti-mouse CD16/32, clone 93) BioLegend Cat#101320: RRID:AB_1574975

Bacterial and Virus Strains

TOP10 Invitrogen Cat#C404003
DH5α Thermofisher Cat#18265017
AAV-DJ Cell Biolabs Cat#VPK-400-DJ
AAV-6 Cell Biolabs Cat#VPK-410-SER6

Chemicals, Peptides, and Recombinant Proteins

Mouse recombinant SCF Peprotech Cat#250-03
Mouse recombinant TPO Peprotech Cat#315-14
Mouse recombinant Flt3-ligand Peprotech Cat#250-31L
Human recombinant IL-11 Peprotech Cat#200-11
StemSpanTM SFEM II Stemcell Cat#09655
Gentamycin Lonza Cat#17-519L
spCas9 IDT Cat#1074182
spCas9 MDC Berlin, Germany N/A
Polyethylenimine (PEI) Polysciences Cat#23966-1
Pluronic F-68 Thermo Scientific Cat#24040032
OptiPrepTM Density Gradient Medium Sigma Cat#D1556-250ML
Benzonase® endonuclease Millipore Cat#70746-3
DNase QIAGEN Cat#79254
DAPI Sigma Cat#D9542-5MG
AMPure XP beads Beckman Coulter Cat#A63881
RNA Gel Loading Dye (2x) Thermo Scientific Cat#R0641

Critical Commercial Assays

Zero Blunt® TOPO® PCR Cloning Kit Invitrogen Cat#450245
TOPO® TA Cloning® Kit Invitrogen Cat# K4500-01
CloneJET PCR cloning kit Thermo Scientific Cat#K1232
Synthetic modified sgRNAs Synthego N/A
Alt-R® CRISPR sgRNAs IDT N/A
Alt-R® CRISPR tracrRNA IDT Cat#1072534
Anti-Sca-1 Microbead Kit (FITC), mouse Miltenyi Biotec Cat#130-092-529
TaqMan PCR master mix Life technologies Cat#4324018
NucleoSpin® Gel and PCR clean-up Macherey-Nagel Cat#740609.250
NucleoSpin® Plasmid Macherey-Nagel Cat#740588.250
Qiaquick® gel extraction kit QIAGEN Cat#28704
Herculase II Fusion DNA Polymerase Agilent Technology Cat# 600677
LongAmp® Taq 2X Master Mix NEB Cat# M0287L
CellTrace™ Violet Cell Proliferation Kit Thermo Scientific Cat#C34571
MethoCult GF M3434 Stemcell Cat#03434
T7 endonuclease I assay NEB Cat# M0302S

Experimental Models: Cell Lines

HEK293T ATCC ATCC®CRL-3216

Experimental Models: Organisms/Strains

C57BL/6 Taconic C57BL/6NTac
R26-Cas9iGFP Chu et al., 2016b N/A
Rag2−/−−/− Taconic N/A
Rag2−/− Taconic RAGN12

Oligonucleotides

Synthetic modified sgLmnb1: 5′- GTCTTGACAAGTTCACATAA This paper N/A
Synthetic modified sgActb: 5′- AGTCCGCCTAGAAGCACTTG Yao et al., 2017 N/A
Alt-R® CRISPR sg-1 to target the TK-Neo-pA: 5′- ACACGCAG
ATGCAGTCGGGG
This paper N/A
Alt-R® CRISPR sg-2 to target the TK-Neo-pA: 5′- CTGCGCTG
ACAGCCGGAACA
This paper N/A

Recombinant DNA

pAAV-DJ Cell Biolabs Cat#VPK-420-DJ
pAAV-DJ-Lmnb1-T2A-mCherry This paper N/A
pAAV-DJ-Actb-T2A-BFP This paper N/A
pAAV-DJ-Rag2wildtype This paper N/A
pAAV-Helper Cell Biolabs Cat#VPK-420-DJ
pAAV-DJ-Rep/Cap Cell Biolabs Cat#VPK-420-DJ
pAAV-6-Rep/Cap Cell Biolabs # VPK-426
pTV-XhoI/NotI-Lmnb1-T2A-mCherry (dsDNA) This paper N/A
pTV-Nb.BsrDI/NotI-Lmnb1-T2A-mCherry (ssDNA) This paper N/A
pTV-Nb.BsrDI/NotI-Lmnb1-T2A-mCherry (asDNA) This paper N/A

Software and Algorithms

Prism 7.0a GraphPad https://www.graphpad.com/
FlowJo 10.4.1 LLC https://www.flowjo.com/
CrisprGold Chu et al., 2016a, Graf et al., 2019 N/A
ICE Synthego, Hsiau et al., 2019 https://www.synthego.com/
ImageJ NIH imageJ https://imagej.nih.gov/ij