REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
PE anti-mouse Ly6A/E (Sca-1) (Clone D7) | BioLegend | Cat#108107: RRID:AB_313344 |
BV875 anti-mouse Ly6A/E (Sca-1) (Clone D7) | BioLegend | Cat#108139: RRID:AB_2565957 |
APC anti-mouse CD117 (c-kit) (Clone 2B8) | BioLegend | Cat#105812; RRID:AB_313221 |
BV605 anti-mouse CD150 (Clone TC15-12F12.2) | BioLegend | Cat#115927; RRID:AB_11204248 |
APC/Cy7 anti-mouse CD48 (Clone HM48-1) | BioLegend | Cat#103431: RRID:AB_2561462 |
PE/Cy7 anti-mouse B220 (Clone RA3-6B2) | BioLegend | Cat#103221: RRID:AB_313004 |
BV785 anti-mouse B220 (Clone RA3-6B2) | BioLegend | Cat#103245: RRID: AB_11203538 |
BV605 anti-mouse CD19 (Clone 6D5) | BioLegend | Cat#115539: RRID:AB_11203538 |
BV785 anti-mouse CD19 (Clone 6D5) | BioLegend | Cat#115543: RRID:AB_11218994 |
BV605 anti-mouse CD11b (Clone M1/70) | BioLegend | Cat#101237: RRID:AB_11126744 |
PE/Cy7 anti-mouse CD11b (Clone M1/70) | BioLegend | Cat#101215: RRID:AB_312798 |
Alexa Fluor® 700 anti-mouse Gr-1 (Clone RB6-8C5) | BioLegend | Cat#108421: RRID:AB_493728 |
PE anti-mouse Gr-1 (Clone RB6-8C5) | BioLegend | Cat# 108407: RRID:AB_313372 |
PE/Cy7 anti-mouse Gr-1 (Clone RB6-8C5) | BioLegend | Cat#108415: RRID:AB_313380 |
PE/Cy7 anti-mouse CD3e (Clone 145-2C11) | BioLegend | Cat#100319: RRID:AB_312684 |
Alexa Fluor® 647 anti-mouse CD3e (Clone 145-2C11) | BioLegend | Cat#100324: RRID:AB_492861 |
PE/Cy7 anti-mouse NK-1.1 (Clone PK136) | BioLegend | Cat#108713: RRID:AB_389363 |
PE/Cy7 anti-mouse TER-119 (Clone TER-119) | BioLegend | Cat#116221: RRID:AB_2137789 |
PE/Cy7 anti-mouse CD45 (Clone 30-F11) | BioLegend | Cat#103113: RRID:AB_312978 |
TruStain FcX (anti-mouse CD16/32, clone 93) | BioLegend | Cat#101320: RRID:AB_1574975 |
Bacterial and Virus Strains | ||
TOP10 | Invitrogen | Cat#C404003 |
DH5α | Thermofisher | Cat#18265017 |
AAV-DJ | Cell Biolabs | Cat#VPK-400-DJ |
AAV-6 | Cell Biolabs | Cat#VPK-410-SER6 |
Chemicals, Peptides, and Recombinant Proteins | ||
Mouse recombinant SCF | Peprotech | Cat#250-03 |
Mouse recombinant TPO | Peprotech | Cat#315-14 |
Mouse recombinant Flt3-ligand | Peprotech | Cat#250-31L |
Human recombinant IL-11 | Peprotech | Cat#200-11 |
StemSpanTM SFEM II | Stemcell | Cat#09655 |
Gentamycin | Lonza | Cat#17-519L |
spCas9 | IDT | Cat#1074182 |
spCas9 | MDC Berlin, Germany | N/A |
Polyethylenimine (PEI) | Polysciences | Cat#23966-1 |
Pluronic F-68 | Thermo Scientific | Cat#24040032 |
OptiPrepTM Density Gradient Medium | Sigma | Cat#D1556-250ML |
Benzonase® endonuclease | Millipore | Cat#70746-3 |
DNase | QIAGEN | Cat#79254 |
DAPI | Sigma | Cat#D9542-5MG |
AMPure XP beads | Beckman Coulter | Cat#A63881 |
RNA Gel Loading Dye (2x) | Thermo Scientific | Cat#R0641 |
Critical Commercial Assays | ||
Zero Blunt® TOPO® PCR Cloning Kit | Invitrogen | Cat#450245 |
TOPO® TA Cloning® Kit | Invitrogen | Cat# K4500-01 |
CloneJET PCR cloning kit | Thermo Scientific | Cat#K1232 |
Synthetic modified sgRNAs | Synthego | N/A |
Alt-R® CRISPR sgRNAs | IDT | N/A |
Alt-R® CRISPR tracrRNA | IDT | Cat#1072534 |
Anti-Sca-1 Microbead Kit (FITC), mouse | Miltenyi Biotec | Cat#130-092-529 |
TaqMan PCR master mix | Life technologies | Cat#4324018 |
NucleoSpin® Gel and PCR clean-up | Macherey-Nagel | Cat#740609.250 |
NucleoSpin® Plasmid | Macherey-Nagel | Cat#740588.250 |
Qiaquick® gel extraction kit | QIAGEN | Cat#28704 |
Herculase II Fusion DNA Polymerase | Agilent Technology | Cat# 600677 |
LongAmp® Taq 2X Master Mix | NEB | Cat# M0287L |
CellTrace™ Violet Cell Proliferation Kit | Thermo Scientific | Cat#C34571 |
MethoCult GF M3434 | Stemcell | Cat#03434 |
T7 endonuclease I assay | NEB | Cat# M0302S |
Experimental Models: Cell Lines | ||
HEK293T | ATCC | ATCC®CRL-3216 |
Experimental Models: Organisms/Strains | ||
C57BL/6 | Taconic | C57BL/6NTac |
R26-Cas9iGFP | Chu et al., 2016b | N/A |
Rag2−/− cγ−/− | Taconic | N/A |
Rag2−/− | Taconic | RAGN12 |
Oligonucleotides | ||
Synthetic modified sgLmnb1: 5′- GTCTTGACAAGTTCACATAA | This paper | N/A |
Synthetic modified sgActb: 5′- AGTCCGCCTAGAAGCACTTG | Yao et al., 2017 | N/A |
Alt-R® CRISPR sg-1 to target the TK-Neo-pA: 5′- ACACGCAG ATGCAGTCGGGG |
This paper | N/A |
Alt-R® CRISPR sg-2 to target the TK-Neo-pA: 5′- CTGCGCTG ACAGCCGGAACA |
This paper | N/A |
Recombinant DNA | ||
pAAV-DJ | Cell Biolabs | Cat#VPK-420-DJ |
pAAV-DJ-Lmnb1-T2A-mCherry | This paper | N/A |
pAAV-DJ-Actb-T2A-BFP | This paper | N/A |
pAAV-DJ-Rag2wildtype | This paper | N/A |
pAAV-Helper | Cell Biolabs | Cat#VPK-420-DJ |
pAAV-DJ-Rep/Cap | Cell Biolabs | Cat#VPK-420-DJ |
pAAV-6-Rep/Cap | Cell Biolabs | # VPK-426 |
pTV-XhoI/NotI-Lmnb1-T2A-mCherry (dsDNA) | This paper | N/A |
pTV-Nb.BsrDI/NotI-Lmnb1-T2A-mCherry (ssDNA) | This paper | N/A |
pTV-Nb.BsrDI/NotI-Lmnb1-T2A-mCherry (asDNA) | This paper | N/A |
Software and Algorithms | ||
Prism 7.0a | GraphPad | https://www.graphpad.com/ |
FlowJo 10.4.1 | LLC | https://www.flowjo.com/ |
CrisprGold | Chu et al., 2016a, Graf et al., 2019 | N/A |
ICE | Synthego, Hsiau et al., 2019 | https://www.synthego.com/ |
ImageJ | NIH imageJ | https://imagej.nih.gov/ij |