Bacterial and Virus Strains |
|
Lenti-miR-132-3p |
in-house |
N/A |
Lenti-scr |
in-house |
N/A |
Lenti-miR-125b-5p |
in-house |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
tetraisopropyl pyrophosphoramide |
Sigma-Aldrich |
T1505 |
Acetylthiocholine iodide |
Sigma-Aldrich |
A5751 |
ciliary neurotrophic factor |
Sigma-Aldrich (Merck) |
Cat#C3710 |
TRIzol |
ThermoFisher Scientific |
Cat#15596018 |
|
Critical Commercial Assays |
|
Dual Luciferase Assay kit |
Promega, WI USA |
E1910 |
NEBNext Multiplex Small RNA Library Prep Set for Illumina |
New England BioLabs |
Cat#E7330 |
|
Deposited Data |
|
Short RNA sequencing of LA-N-2 and LA-N-5 |
NCBI GEO |
GSE132951 |
Short RNA sequencing of LA-N-2 |
NCBI GEO |
GSE120520 |
|
Experimental Models: Cell Lines |
|
U937 |
ATCC |
CRL-1593.2; RRID:CVCL_0007 |
HEK293T |
ATCC |
CRL-3216; RRID:CVCL_0063 |
LA-N-2 |
DSMZ |
Cat# ACC-671; RRID:CVCL_1829 |
LA-N-5 |
DSMZ |
Cat# ACC-673; RRID:CVCL_0389 |
|
Oligonucleotides |
|
vAChT primer FW+RV |
Biorad |
PrimePCR “qHsaCED0047922” |
RPLP0 primer FW+RV |
Biorad |
PrimePCR “qHsaCED0038653” |
Custom ChAT primer FW |
ThermoFisher Scientific |
N/A |
Custom ChAT primer RV |
ThermoFisher Scientific |
N/A |
Custom ACTB primer FW |
ThermoFisher Scientific |
N/A |
Custom ACTB primer RV |
ThermoFisher Scientific |
N/A |
|
Software and Algorithms |
|
R version 3.5.3 |
https://www.r-project.org |
N/A |
miRExpress 2.1.4 |
http://mirexpress.mbc.nctu.edu.tw/index.php |
N/A |
DESeq2 |
http://www.bioconductor.org |
N/A |
Neo4j v3 |
https://.neo4j.com/ |
N/A |
limma |
http://www.bioconductor.org |
N/A |
circos |
http://www.circos.ca |
N/A |
topGO |
http://www.bioconductor.org |
N/A |
|
Other |
|
Hsa-miR-132-3p plasmid |
GeneCopoeia |
MmiR3274-MR03 |
Negative control plasmid (scrambled control for pEZX-MR03) |
GeneCopoeia |
CmiR0001-MR03 |
microRNA Target Selection System plasmid |
System Biosciences, CA, USA |
#MS040-4xxA-1 |
EcoRI restriction enzyme |
New England Biolabs |
R0101 |
NotI restriction enzyme |
New England Biolabs |
R3189 |
plate reader |
Tecan |
GENios Pro Microplate Reader |
CFX96 real-time PCR cycler |
Biorad |
Cat#1855196 |
NextSeq 550 |
Illumina |
Cat#SY-415-1002 |