Table 2.
Summary statistics of annotated repeats
| Type | Repbase TEs | RepeatModeler | TE proteins | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
| Length (bp) | Per cent of sequence (%) | Length (bp) | Per cent of sequence (%) | Length (bp) | Per cent of sequence (%) | Length (bp) | Per cent of sequence (%) | |
| DNA | 72,547,595 | 6.39 | 152,578,623 | 13.44 | 12,639,588 | 1.11 | 190,003,264 | 16.73 |
| LINE | 54,462,165 | 4.8 | 48,239,766 | 4.25 | 47,434,545 | 4.18 | 72,820,879 | 6.41 |
| LTR | 15,915,741 | 1.4 | 13,792,952 | 1.21 | 10,697,269 | 0.94 | 79,800,582 | 7.03 |
| SINE | 7,048,847 | 0.62 | 5,336,045 | 0.47 | 0 | 0 | 7,684,877 | 0.68 |
| Other | 2,402,087 | 0.21 | 14,324,885 | 1.26 | 620,554 | 0.06 | 47,787,296 | 4.21 |
| Unknown | 569,614 | 0.05 | 102,421,979 | 9.02 | 0 | 0 | 90,408,213 | 7.96 |
| Total | 152,946,049 | 13.47 | 336,694,250 | 29.65 | 71,391,956 | 6.29 | 488,505,111 | 43.02 |