Table 1.
Coding Impact | Pathogenic | Likely Pathogenic | Uncertain Significance | Likely Benign | Benign | Total |
---|---|---|---|---|---|---|
Synonymous | 0 | 0 | 34 | 31 | 15 | 80 |
Missense | 199 | 44 | 93 | 2 | 19 | 357 |
Nonsense | 27 | 2 | 1 | 0 | 0 | 30 |
Frameshift | 29 | 2 | 0 | 0 | 0 | 31 |
Inframe Indel | 1 | 3 | 0 | 0 | 0 | 4 |
Splice junction loss | 1 | 1 | 0 | 0 | 0 | 2 |
Non-coding | 10 | 10 | 25 | 46 | 101 | 192 |
Total | 267 | 62 | 153 | 79 | 135 | 696 |
Note: This summary is useful in order to obtain some high-level insights into the modes of pathogenicity for that gene, for example whether synonymous variants mostly benign, or whether the majority of frame-shift variants are pathogenic.