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. Author manuscript; available in PMC: 2020 Jun 1.
Published in final edited form as: Neurobiol Aging. 2019 Feb 20;78:142–154. doi: 10.1016/j.neurobiolaging.2019.02.012

Table 1.

DAVID enrichment categories for unambiguous probesets with hippocampal expression significantly increased in association with physical activity and significantly decreased with Aging or AD. Note that significant genes may be contained with in multiple enriched terms within a category.

Mitochondria-related categories Database Term Count % EASE PValue List Total Pop Hits Pop Total Fold
Enrichment
Benjamini
Mitochondrion UP_KEYWORDS 143 12.16 1.98E-07 1138 881 10612 1.51 2.04E-05
Mitochondrion GOTERM_CC_DIRECT GO:0005739 162 13.78 3.57E-08 1047 1026 9961 1.50 7.04E-06
Mitochondrion inner membrane UP_KEYWORDS 55 4.68 2.12E-09 1138 218 10612 2.35 4.39E-07
Mitochondrion inner membrane GOTERM_CC_DIRECT GO:0005743 74 6.29 2.77E-08 1047 364 9961 1.93 8.20E-06
Mitochondrion outer membrane UP_KEYWORDS 19 1.62 3.41E-03 1138 85 10612 2.08 9.60E-02
Respiratory chain UP_KEYWORDS 17 1.45 1.41E-04 1138 55 10612 2.88 8.26E-03
oxidative phosphorylation KEGG_PATHWAY hsa00190 33 2.81 2.19E-09 380 107 3909 3.17 5.54E-07
mitochondrial respiratory chain complex I GOTERM_CC_DIRECT GO:0005747 15 1.28 5.70E-05 1047 42 9961 3.40 4.81E-03
ubiquinone UP_KEYWORDS 10 0.85 1.88E-03 1138 28 10612 3.33 6.83E-02
mitochondrial electron transport, NADH to ubiquinone GOTERM_BP_DIRECT GO:0006120 15 1.28 6.51E-05 972 43 9380 3.37 9.24E-02
mitochondrial proton-transporting ATP synthase complex GOTERM_CC_DIRECT GO:0005753 8 0.68 2.23E-03 1047 19 9961 4.01 9.67E-02
Metabolic pathways KEGG_PATHWAY hsa01100 103 8.76 6.18E-04 380 792 3909 1.34 2.21E-02
Synapse, plasticity -related categories Database Term Count % EASE PValue List Total Pop Hits Pop Total Fold
Enrichment
Benjamini
Synapse UP_KEYWORDS 60 5.10 1.23E-09 1138 245 10612 2.28 5.06E-07
synaptic vesicle membrane GOTERM_CC_DIRECT GO:0030672 16 1.36 4.16E-06 1047 39 9961 3.90 4.92E-04
chemical synaptic transmission GOTERM_BP_DIRECT GO:0007268 31 2.64 3.31E-05 972 134 9380 2.23 9.38E-02
Postsynaptic cell membrane UP_KEYWORDS 26 2.21 1.46E-04 1138 108 10612 2.24 7.50E-03
Postsynaptic membrane GOTERM_CC_DIRECT GO:0045211 29 2.47 2.08E-04 1047 132 9961 2.09 1.36E-02
crebPathway:Transcription factor CREB and its extracellular signals BIOCARTA 9 0.77 1.89E-03 102 26 1060 3.60 6.89E-02
axon GOTERM_CC_DIRECT GO:0030424 38 3.23 3.40E-05 1047 178 9961 2.03 3.35E-03
myelin sheath GOTERM_CC_DIRECT GO:0043209 36 3.06 7.04E-07 1047 140 9961 2.45 1.04E-04
growth cone GOTERM_CC_DIRECT GO:0030426 23 1.96 1.62E-04 1047 92 9961 2.38 1.19E-02
neuron projection GOTERM_CC_DIRECT GO:0043005 31 2.64 1.87E-03 1047 165 9961 1.79 9.56E-02
Cell junction UP_KEYWORDS 78 6.63 4.37E-06 1138 433 10612 1.68 3.61E-04
Cell junction GOTERM_CC_DIRECT 66 5.61 2.16E-08 1047 308 9961 2.04 1.28E-05
Other categories Database Term Count % EASE PValue List Total Pop Hits Pop Total Fold
Enrichment
Benjamini
gap junction KEGG_PATHWAY hsa04540 16 1.36 1.25E-03 380 66 3909 2.49 3.12E-02
Circadian entrainment KEGG_PATHWAY hsa04713 17 1.45 6.86E-04 380 69 3909 2.53 2.15E-02
Transport UP_KEYWORDS 172 14.63 4.71E-04 1138 1265 10612 1.27 2.14E-02
Transit peptide UP_KEYWORDS 77 6.55 1.07E-05 1138 436 10612 1.65 7.33E-04
chrebpPathway:ChREBP regulation by carbohydrates and cAMP BIOCARTA 9 0.77 3.51E-05 102 16 1060 5.85 6.62E-03
agpcrPathway:Attenuation of GPCR Signaling BIOCARTA 7 0.60 2.02E-04 102 11 1060 6.61 1.89E-02
cskPathway:Activation of Csk by cAMP-dependent Protein Kinase Inhibits Signaling through the T
Cell Receptor
BIOCARTA 7 0.60 1.03E-03 102 14 1060 5.20 6.30E-02
plcePathway:Phospholipase C-epsilon pathway BIOCARTA 6 0.51 1.22E-03 102 10 1060 6.24 5.60E-02
raccPathway:Ion Channels and Their Functional Role in Vascular Endothelium BIOCARTA 6 0.51 2.07E-03 102 11 1060 5.67 6.31E-02
nos1Pathway:Nitric Oxide Signaling Pathway BIOCARTA 7 0.60 2.35E-03 102 16 1060 4.55 6.15E-02
gpcrPathway:Signaling Pathway from G-Protein Families BIOCARTA 9 0.77 3.19E-03 102 28 1060 3.34 7.28E-02