Table 1.
Mitochondria-related categories | Database | Term | Count | % | EASE PValue | List Total | Pop Hits | Pop Total | Fold Enrichment |
Benjamini |
---|---|---|---|---|---|---|---|---|---|---|
Mitochondrion | UP_KEYWORDS | 143 | 12.16 | 1.98E-07 | 1138 | 881 | 10612 | 1.51 | 2.04E-05 | |
Mitochondrion | GOTERM_CC_DIRECT | GO:0005739 | 162 | 13.78 | 3.57E-08 | 1047 | 1026 | 9961 | 1.50 | 7.04E-06 |
Mitochondrion inner membrane | UP_KEYWORDS | 55 | 4.68 | 2.12E-09 | 1138 | 218 | 10612 | 2.35 | 4.39E-07 | |
Mitochondrion inner membrane | GOTERM_CC_DIRECT | GO:0005743 | 74 | 6.29 | 2.77E-08 | 1047 | 364 | 9961 | 1.93 | 8.20E-06 |
Mitochondrion outer membrane | UP_KEYWORDS | 19 | 1.62 | 3.41E-03 | 1138 | 85 | 10612 | 2.08 | 9.60E-02 | |
Respiratory chain | UP_KEYWORDS | 17 | 1.45 | 1.41E-04 | 1138 | 55 | 10612 | 2.88 | 8.26E-03 | |
oxidative phosphorylation | KEGG_PATHWAY | hsa00190 | 33 | 2.81 | 2.19E-09 | 380 | 107 | 3909 | 3.17 | 5.54E-07 |
mitochondrial respiratory chain complex I | GOTERM_CC_DIRECT | GO:0005747 | 15 | 1.28 | 5.70E-05 | 1047 | 42 | 9961 | 3.40 | 4.81E-03 |
ubiquinone | UP_KEYWORDS | 10 | 0.85 | 1.88E-03 | 1138 | 28 | 10612 | 3.33 | 6.83E-02 | |
mitochondrial electron transport, NADH to ubiquinone | GOTERM_BP_DIRECT | GO:0006120 | 15 | 1.28 | 6.51E-05 | 972 | 43 | 9380 | 3.37 | 9.24E-02 |
mitochondrial proton-transporting ATP synthase complex | GOTERM_CC_DIRECT | GO:0005753 | 8 | 0.68 | 2.23E-03 | 1047 | 19 | 9961 | 4.01 | 9.67E-02 |
Metabolic pathways | KEGG_PATHWAY | hsa01100 | 103 | 8.76 | 6.18E-04 | 380 | 792 | 3909 | 1.34 | 2.21E-02 |
Synapse, plasticity -related categories | Database | Term | Count | % | EASE PValue | List Total | Pop Hits | Pop Total | Fold Enrichment |
Benjamini |
---|---|---|---|---|---|---|---|---|---|---|
Synapse | UP_KEYWORDS | 60 | 5.10 | 1.23E-09 | 1138 | 245 | 10612 | 2.28 | 5.06E-07 | |
synaptic vesicle membrane | GOTERM_CC_DIRECT | GO:0030672 | 16 | 1.36 | 4.16E-06 | 1047 | 39 | 9961 | 3.90 | 4.92E-04 |
chemical synaptic transmission | GOTERM_BP_DIRECT | GO:0007268 | 31 | 2.64 | 3.31E-05 | 972 | 134 | 9380 | 2.23 | 9.38E-02 |
Postsynaptic cell membrane | UP_KEYWORDS | 26 | 2.21 | 1.46E-04 | 1138 | 108 | 10612 | 2.24 | 7.50E-03 | |
Postsynaptic membrane | GOTERM_CC_DIRECT | GO:0045211 | 29 | 2.47 | 2.08E-04 | 1047 | 132 | 9961 | 2.09 | 1.36E-02 |
crebPathway:Transcription factor CREB and its extracellular signals | BIOCARTA | 9 | 0.77 | 1.89E-03 | 102 | 26 | 1060 | 3.60 | 6.89E-02 | |
axon | GOTERM_CC_DIRECT | GO:0030424 | 38 | 3.23 | 3.40E-05 | 1047 | 178 | 9961 | 2.03 | 3.35E-03 |
myelin sheath | GOTERM_CC_DIRECT | GO:0043209 | 36 | 3.06 | 7.04E-07 | 1047 | 140 | 9961 | 2.45 | 1.04E-04 |
growth cone | GOTERM_CC_DIRECT | GO:0030426 | 23 | 1.96 | 1.62E-04 | 1047 | 92 | 9961 | 2.38 | 1.19E-02 |
neuron projection | GOTERM_CC_DIRECT | GO:0043005 | 31 | 2.64 | 1.87E-03 | 1047 | 165 | 9961 | 1.79 | 9.56E-02 |
Cell junction | UP_KEYWORDS | 78 | 6.63 | 4.37E-06 | 1138 | 433 | 10612 | 1.68 | 3.61E-04 | |
Cell junction | GOTERM_CC_DIRECT | 66 | 5.61 | 2.16E-08 | 1047 | 308 | 9961 | 2.04 | 1.28E-05 |
Other categories | Database | Term | Count | % | EASE PValue | List Total | Pop Hits | Pop Total | Fold Enrichment |
Benjamini |
---|---|---|---|---|---|---|---|---|---|---|
gap junction | KEGG_PATHWAY | hsa04540 | 16 | 1.36 | 1.25E-03 | 380 | 66 | 3909 | 2.49 | 3.12E-02 |
Circadian entrainment | KEGG_PATHWAY | hsa04713 | 17 | 1.45 | 6.86E-04 | 380 | 69 | 3909 | 2.53 | 2.15E-02 |
Transport | UP_KEYWORDS | 172 | 14.63 | 4.71E-04 | 1138 | 1265 | 10612 | 1.27 | 2.14E-02 | |
Transit peptide | UP_KEYWORDS | 77 | 6.55 | 1.07E-05 | 1138 | 436 | 10612 | 1.65 | 7.33E-04 | |
chrebpPathway:ChREBP regulation by carbohydrates and cAMP | BIOCARTA | 9 | 0.77 | 3.51E-05 | 102 | 16 | 1060 | 5.85 | 6.62E-03 | |
agpcrPathway:Attenuation of GPCR Signaling | BIOCARTA | 7 | 0.60 | 2.02E-04 | 102 | 11 | 1060 | 6.61 | 1.89E-02 | |
cskPathway:Activation of Csk by cAMP-dependent
Protein Kinase Inhibits Signaling through the T Cell Receptor |
BIOCARTA | 7 | 0.60 | 1.03E-03 | 102 | 14 | 1060 | 5.20 | 6.30E-02 | |
plcePathway:Phospholipase C-epsilon pathway | BIOCARTA | 6 | 0.51 | 1.22E-03 | 102 | 10 | 1060 | 6.24 | 5.60E-02 | |
raccPathway:Ion Channels and Their Functional Role in Vascular Endothelium | BIOCARTA | 6 | 0.51 | 2.07E-03 | 102 | 11 | 1060 | 5.67 | 6.31E-02 | |
nos1Pathway:Nitric Oxide Signaling Pathway | BIOCARTA | 7 | 0.60 | 2.35E-03 | 102 | 16 | 1060 | 4.55 | 6.15E-02 | |
gpcrPathway:Signaling Pathway from G-Protein Families | BIOCARTA | 9 | 0.77 | 3.19E-03 | 102 | 28 | 1060 | 3.34 | 7.28E-02 |