Table 1.
Xanthomonas spp. and other bacterial strains used for the analysis of the specificity of the LAMP assays developed in this study
| Species | Strain | Host | PCRa | LAMPb |
|---|---|---|---|---|
| Xanthomonas arboricola pv. pruni | Xap1 | Peach | +c | + |
| X. axonopodis pv. phaseoli | KACC 10559 | Bean | − | − |
| X. axonopodis pv. citri | KCTC 2856 | Citrus | − | − |
| X. axonopodis pv. allii | LMG 25672 | Onion | − | − |
| X. campestris pv. malvacearum | KACC 12874 | Cotton | − | − |
| X. campestris pv. glycines | KACC 10491 | Soybean | − | − |
| X. campestris pv. zantedeschiae | NCPPB 4326 | White flowered calla lily | − | − |
| X. axonopodis pv. poinsettiicola | NCPPB 581 | Poinsettia | − | − |
| X. campestris pv. hyacinthi | NCPPB 205 | Hyacinth | + | − |
| X. campestris pv. campestris | LMG 559 | Crucifers | − | − |
| X. cucurbitae | LMG 8662 | Watermelon | − | − |
| X. oryzae pv. oryzae | KACC 10331 | Rice | − | − |
| X. translucens | KCTC 2751 | Cereal crops | − | − |
| Acidovorax facilis | LMG 2193 | NR | + | − |
| Burkholderia gladioli pv. alliicola | NCPPB 947 | Onion | − | − |
| B. caryophylli | NCPPB 2151 | Carnation | − | − |
| Spirosoma lituiforme | KCTC 52724 | NR | − | − |
| S. horti | KCTC 52728 | NR | − | − |
| S. humi | KCTC 52729 | NR | − | − |
LAMP, loop-mediated isothermal amplification; KACC, Korean Agricultural Culture Collection; LMG, Bacterial Collection, Laboratorium voor Microbiologie, Universiteit Gent, Belgium; KCTC, Korean Collection for Type Cultures; NCPPB, National Collection of Plant Pathogenic Bacteria; NR, not reported.
a
PCR using Y17CoF and Y17CoR.
b
LAMP method developed in this study.
c
+, positive reaction; −, negative reaction.