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. 2019 Oct 25;294(49):18650–18661. doi: 10.1074/jbc.RA119.011307

Table 2.

Calculations of binding free energy using MM-PBSA for Poly-P–bound AtPRF3

The values are given in KJ/mol. The percentage is the ratio of the number of structures (frames) belonging to that particular cluster to the total number of structures we sampled. sasa, solvent-accessible surface area.

Cluster Percentage Evdw Eelec Epolar Esasa Ebinding
%
AtPRF3Δ22–Poly-P 76.64 −289.099 ± 0.591 −573.063 ± 2.513 606.003 ± 3.075 −34.373 ± 0.055 −290.624 ± 1.140
AtPRF3Δ22M1–Poly-P 82.63 −301.306 ± 0.675 −553.927 ± 2.382 605.557 ± 2.947 −35.945 ± 0.079 −285.674 ± 1.804
AtPRF3Δ22M3–Poly-P 32.05 −276.586 ± 0.861 −575.155 ± 3.003 582.271 ± 3.605 −33.819 ± 0.095 −303.033 ± 1.551
AtPRF3Δ37–Poly-P 100 −200.328 ± 0.346 −287.724 ± 1.276 259.269 ± 1.697 −22.582 ± 0.042 −251.381 ± 0.957