. Author manuscript; available in PMC: 2021 Jan 1.

Published in final edited form as: Proteins. 2019 Jul 19;88(1):57–68. doi: 10.1002/prot.25766

Table I.

Alignment counts for Hsc82, Hsp82, and AHP1 when processed with a variety of parameters. Alignment counts are un-normalized for sequencing depth or transcript length.

Unstressed (SRR1520311)

transcript	multi-mapping alignments included (-a)	multi-mapping alignments excluded (-m 1)	bowtie default (-k 1)	MMR

Hsc82	144923	59114	125180	138290
Hsp82	93224	7405	27147	14037
AHP1	96539	96539	96539	96539

Heat shock (SRR1520327)

transcript	multi-mapping alignments included (-a)	multi-mapping alignments excluded (-m 1)	bowtie default (-k 1)	MMR

Hsc82	123984	21464	58639	74149
Hsp82	155384	52845	118182	102680
AHP1	31078	31078	31078	31078