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. 2019 Dec 3;10:2765. doi: 10.3389/fmicb.2019.02765

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Copyright © 2019 Mohamed, Ito and Omori.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Estimation of R₀ from genetic distance and geographical distance. The effect of geographical distance threshold on the estimate of R₀ is shown when genetic distance threshold fixed at the between-household variation. (A) Genetic distances and geographical distance were used to obtain candidate transmission pairs. (B) Phylogeny, genetic distances, and geographical distance were used to obtain candidate transmission pairs.