Table 3.
Excerpt of result table from the extraction of GRCh38 TCGA Cholangiocarcinoma data, grouped by patient (i.e. Donor ID)
| Source ID | Donor ID | Data type | Healthy | Technique |
|---|---|---|---|---|
| 3787a... | 07755... | Copy number segment | FALSE | Genotyping array |
| e6443... | 07755... | Copy number segment | TRUE | Genotyping array |
| f36ef... | 07755... | Gene expression quantification | FALSE | RNA-Seq |
| f7b6d... | 07755... | Isoform expression quantification | FALSE | miRNA-Seq |
| 3787a... | 07755... | Masked copy number segment | FALSE | Genotyping array |
| e6443... | 07755... | Masked copy number segment | TRUE | Genotyping array |
| 9aa16... | 07755... | Masked somatic mutation | FALSE | WXS |
| 1ba92... | 07755... | Methylation beta value | FALSE | Methylation array |
| f7b6d... | 07755... | miRNA expression quantification | FALSE | miRNA-Seq |
| 2cbc6... | 20bf7... | Copy number segment | TRUE | Genotyping array |
| c2d57... | 20bf7... | Copy number segment | TRUE | Genotyping array |
| d3b1d... | 20bf7... | Gene expression quantification | FALSE | RNA-Seq |
| 2649a... | 20bf7... | Gene expression quantification | TRUE | RNA-Seq |
| 016fd... | 20bf7... | Isoform expression quantification | FALSE | miRNA-Seq |
| f002e... | 20bf7... | Isoform expression quantification | TRUE | miRNA-Seq |
| 5150... | 20bf7... | Masked copy number segment | FALSE | Genotyping array |
| 2cbc6... | 20bf7... | Masked copy number segment | TRUE | Genotyping array |
| c2d57... | 20bf7... | Masked copy number segment | TRUE | Genotyping array |
| 80 052... | 20bf7... | Masked somatic mutation | FALSE | WXS |
| 33 585... | 20bf7... | Methylation beta value | FALSE | Methylation array |
| d8106... | 20bf7... | Methylation beta value | TRUE | Methylation array |
| 016fd... | 20bf7... | miRNA expression quantification | FALSE | miRNA-Seq |
| f002e... | 20bf7... | miRNA expression quantification | TRUE | miRNA-Seq |