Table 4.

Nominally significant SNPs in Crohn’s disease and IBD GRS

GRS	Chromosome	Position	A1	A1 frequency	Beta	SE	p
Both	10	6081230	C	0.836092	2.2 × 10–4	8.85 × 10–5	1.4 × 10–2
Both	2	28614794	C	0.519615	1.5 × 10–4	6.58 × 10–5	1.9 × 10–2
Both	22	30493882	G	0.55509	1.8 × 10–4	6.58 × 10–5	7.7 × 10–3
Both	17	32593665	A	0.72546	1.6 × 10–4	7.32 × 10–5	3.0 × 10–2
Both	21	45615741	G	0.394392	1.3 × 10–4	6.69 × 10–5	4.7 × 10–2
Both	7	50175654	G	0.573233	−1.7 × 10–4	6.62 × 10–5	1.2 × 10–2
Both	7	50304461	C	0.33364	−1.4 × 10–4	6.94 × 10–5	4.1 × 10–2
Crohn’s disease	12	6491125	G	0.646309	−1.6 × 10–4	6.93 × 10–5	1.8 × 10–2
IBD	7	2869985	T	0.697662	2.3 × 10–4	7.12 × 10–5	1.1 × 10–3
IBD	13	27531267	T	0.82362	2.2 × 10–4	8.58 × 10–5	1.1 × 10–2

Summary statistics of the known risk variants for Crohn’s disease and IBD in our microscopic colitis genome-wide association study for those that pass the nominal p value threshold of 0.05. Abbreviation: IBD, inflammatory bowel disease; GRS, genetic risk score.