. 2019 Dec 4;9:411. doi: 10.3389/fcimb.2019.00411

Table 2.

The DEGs of ΔCcpA mutant.

Gene	Locus tag	FPKM (ctrl)	FPKM (case)	log2Fold Change	FDR
(1) Up-regulated DEGs
c185_g93	SSA_0778	32.64	2,011.40	5.79	0.00000
c43_g1	SSA_2020^a	7.32	460.67	6.02	0.00000
c185_g109^b^,^m	SSA_0779^a	132.91	1,892.65	3.49	0.00000
c185_g52^b^,^m	SSA_0776^a	17.59	1,037.19	5.70	0.00000
c184_g184^b^,^c^,^m	SSA_1615^a	270.81	4,128.01	4.03	0.00000
c157_g1^b^,^c^,^m	SSA_1588	21.48	142.36	2.52	0.00000
c184_g183	SSA_0393	79.26	764.76	2.85	0.00000
c246_g1^b^,^c^,^m	SSA_1298^a	487.48	4,096.15	2.99	0.00000
c184_g141^b^,^c^,^m	SSA_1749^a	448.60	2,713.78	2.43	0.00000
c185_g218^b^,^m	SSA_0631	60.92	367.74	2.31	0.00000
c71_g1	SSA_1063	18.64	121.58	2.29	0.00000
c184_g82^b^,^c^,^m	SSA_1918^a	1,391.90	7,543.70	2.24	0.00000
c185_g62^b^,^c^,^m	SSA_1259^a	158.49	817.17	2.09	0.00000
c184_g294^b^,^c^,^m	SSA_0391^a	2,312.95	14,153.22	2.34	0.00000
c184_g18^b^,^c^,^m	SSA_0300	67.70	371.66	2.21	0.00000
c183_g84^b^,^c	SSA_1949^a	132.20	609.00	2.11	0.00000
c183_g30^m	SSA_0509	52.34	358.25	2.40	0.00000
c184_g19^b^,^m	SSA_0572^a	72.24	442.42	2.49	0.00000
c185_g150^b^,^m	SSA_1261^a	70.60	393.52	2.42	0.00000
c449_g1^b^,^m	SSA_2078	69.32	291.42	1.77	0.00000
c185_g56	SSA_2352	20.18	246.58	3.06	0.00000
c185_g235^b^,^m	SSA_1035	57.53	273.58	1.95	0.00000
c184_g71^b^,^m	SSA_0077^a	21.92	133.45	2.25	0.00000
c183_g25	SSA_0508	69.03	302.99	1.91	0.00000
c185_g234	SSA_1252	22.55	132.42	2.21	0.00000
c185_g254^b^,^c^,^m	SSA_0192^a	480.54	1,520.49	1.46	0.00000
c534_g1^b^,^m	SSA_2083	1.19	10.18	2.52	0.00000
c185_g1^b^,^c^,^m	SSA_1256	62.52	312.53	2.23	0.00000
c183_g13	SSA_1207	164.69	548.76	1.37	0.00000
c185_g28	SSA_1251	17.41	105.04	2.32	0.00000
c183_g77^b^,^c^,^m	SSA_0342	2,740.47	9,026.47	1.69	0.00000
c184_g292^b^,^c	SSA_0076^a	29.15	148.31	1.92	0.00000
c184_g132^c	SSA_0075^a	25.22	154.85	2.10	0.00000
c185_g3^b^,^c^,^m	SSA_1034	90.45	261.42	1.38	0.00000
c241_g1^b^,^c^,^m	SSA_0068^a	94.25	281.24	1.21	0.00001
c186_g1^m	SSA_1012	330.19	900.52	1.16	0.00001
c386_g1^b^,^c^,^m	SSA_1009^a	51.41	151.27	1.28	0.00001
c154_g1^b^,^c^,^m	SSA_0453^a	98.37	273.16	1.17	0.00001
c184_g259	SSA_1750	29.82	99.50	1.59	0.00001
c184_g324^c	SSA_1098^a	196.99	699.14	1.69	0.00002
c184_g290^b^,^c^,^m	SSA_0836	85.66	253.80	1.21	0.00002
c185_g121^b^,^m	SSA_0637	43.18	200.86	1.63	0.00003
c184_g170^b^,^c^,^m	SSA_0072^a	32.86	179.23	1.71	0.00003
c185_g32^b^,^c^,^m	SSA_1574	138.44	376.16	1.15	0.00004
c276_g1^b^,^c^,^m	SSA_2084	1.56	9.42	2.72	0.00006
c184_g238	SSA_0607	53.38	181.86	1.75	0.00007
c184_g130	SSA_0394	629.76	1552.53	1.12	0.00009
c184_g185^b^,^c	SSA_0833	61.53	173.14	1.20	0.00010
c184_g156^b^,^c^,^m	SSA_1809^a	504.45	1,583.03	1.28	0.00022
c185_g153^b^,^c^,^m	SSA_1039	375.93	842.09	1.07	0.00023
c183_g35^b^,^m	SSA_0512	101.31	296.07	1.05	0.00027
c184_g9^b^,^m	SSA_2017	31.59	126.87	1.53	0.00028
c184_g102^m	SSA_0831	44.88	122.92	1.20	0.00033
c184_g310^b^,^c^,^m	SSA_0091	81.21	261.34	1.27	0.00035
c184_g3^b^,^c^,^m	SSA_0834	51.54	146.79	1.14	0.00037
c185_g148^c^,^m	SSA_2066	64.52	174.51	1.14	0.00037
c60_g1^m	SSA_2106	3.00	15.43	2.04	0.00046
c184_g125^b^,^c^,^m	SSA_0127	73.10	191.76	1.13	0.00054
c184_g248^b^,^c^,^m	SSA_1752^a	828.77	2,044.10	1.05	0.00073
c184_g281^b^,^c^,^m	SSA_1913	11.03	75.75	2.43	0.00112
c192_g1^b^,^c^,^m	SSA_0297	31.96	98.24	1.60	0.00124
c183_g53^b^,^c^,^m	SSA_2175	16.52	52.95	1.31	0.00138
c185_g127^b^,^m	SSA_0638	37.89	135.65	1.34	0.00144
c185_g242^b^,^m	SSA_1575	150.63	397.53	1.27	0.00177
c183_g96^b^,^c^,^m	SSA_0980	21.52	85.59	1.29	0.00293
c184_g57^m	SSA_1053	28.13	84.64	1.40	0.00344
c184_g139	SSA_1746	473.11	1,073.63	1.00	0.00351
c184_g63^b^,^c^,^m	SSA_1917^a	27.34	82.31	1.08	0.00365
c185_g187^b^,^c^,^m	SSA_0644	5,202.87	13,437.05	1.40	0.00384
c184_g89^b^,^m	SSA_0090	88.75	240.77	1.01	0.00393
c183_g47^b^,^c^,^m	SSA_2167	44.53	112.60	1.01	0.00551
c183_g108^c^,^m	SSA_0318	22.74	75.52	1.03	0.00557
c134_g2^b^,^c^,^m	SSA_1003^a	1.83	5.63	1.10	0.00564
c314_g1^b^,^m	SSA_2096	3.00	16.95	2.59	0.00568
c183_g45^b^,^c^,^m	SSA_0502	32.48	78.56	1.02	0.00650
c185_g230	SSA_2060	33.36	101.01	1.27	0.00765
c183_g90^b^,^c^,^m	SSA_0500	36.50	107.52	1.10	0.00768
c184_g5^b^,^c^,^m	SSA_2230	43.68	123.43	1.03	0.00780
c184_g168	SSA_2018	25.70	75.28	1.21	0.00962
c185_g136	SSA_1614	69.83	152.95	1.00	0.01933
c183_g41	SSA_2177	14.39	37.66	1.34	0.02387
c185_g161	SSA_0667	10.25	27.86	1.33	0.03003
c525_g1^b^,^c^,^m	SSA_1008^a	31.73	70.29	1.17	0.03449
c185_g144^b	SSA_1306	47.73	125.80	1.02	0.04701
(2) Down-regulated DEGs
c185_g162^b	SSA_1576^a	2,355.32	72.38	−5.27	0.00000
c182_g16	SSA_1889	1,449.35	52.64	−4.97	0.00000
c183_G109^b^,^c	SSA_1950	2,214.11	206.75	−3.36	0.00000
c185_G146^b^,^c	SSA_0650^a	1,238.80	394.95	−1.96	0.00000
c184_g210	SSA_0094	1,330.37	327.41	−2.23	0.00000
c184_G204^b^,^c	SSA_0760	74.75	6.52	−3.50	0.00000
c184_g309	SSA_1052	1,412.90	243.16	−2.55	0.00000
c184_G315^b^,^c^,^m	SSA_0757	44.03	4.06	−3.35	0.00000
c184_G202^b^,^c^,^m	SSA_0758	56.88	5.36	−3.40	0.00000
c185_g54^c	SSA_1398	1,209.44	383.14	−2.00	0.00000
c28_g1^c	SSA_2094	11,083.50	2,829.00	−2.22	0.00000
c184_g303^c	SSA_0684	2,379.11	731.09	−1.82	0.00000
c183_g63^b^,^c	SSA_2151	914.26	320.17	−1.63	0.00000
c185_g76^b^,^c	SSA_0886^a	21,601.58	4,635.68	−2.24	0.00000
c242_g1^b^,^c^,^m	SSA_1567	495.17	111.10	−2.08	0.00000
c184_g60^b^,^c	SSA_0687	1,880.60	618.04	−1.67	0.00000
c183_g121	SSA_0918	1,791.45	708.64	−1.61	0.00000
c307_g1	SSA_2379	375.43	153.25	−1.68	0.00000
c185_g39	SSA_2364	2,107.33	1,058.92	−1.35	0.00000
c185_g185	SSA_2371	215.79	93.91	−1.52	0.00001
c184_g230^b^,^c	SSA_0759	35.82	2.48	−3.58	0.00001
c184_g222	SSA_2242	522.98	169.18	−1.70	0.00001
c185_g110^b^,^c	SSA_0860	2,286.06	878.21	−1.48	0.00001
c185_g14	SSA_0848^a	3,980.18	1,824.31	−1.29	0.00002
c185_g95	SSA_0195	93.96	32.03	−2.09	0.00002
c185_g65^b^,^c^,^m	SSA_0753	3,079.98	1,410.53	−1.36	0.00002
c185_g189^b^,^c	SSA_1265	20,414.68	8,368.19	−1.37	0.00003
c185_g259	SSA_0193	167.85	60.49	−1.76	0.00004
c185_g238	SSA_0682	3,591.24	1,442.97	−1.41	0.00005
c185_g225	SSA_0170	322.87	127.58	−1.39	0.00005
c185_g78^b^,^c	SSA_1066	2,400.31	795.49	−1.54	0.00005
c184_g80^b^,^c	SSA_2141	159.49	35.60	−2.04	0.00006
c184_g2^b^,^c^,^m	SSA_1349	397.55	162.35	−1.43	0.00007
c183_g117	SSA_0822	2,617.79	1,302.75	−1.19	0.00008
c182_g14	SSA_1888	111.54	44.66	−1.36	0.00008
c184_g325^b^,^c	SSA_2318	222.14	140.91	−1.05	0.00009
c184_g167	SSA_2204	379.26	146.64	−1.43	0.00013
c184_g171	SSA_2327	725.33	183.46	−1.77	0.00015
c185_g226^c	SSA_1536	362.28	108.70	−1.67	0.00016
c184_g295^b^,^c	SSA_1943	486.44	219.83	−1.28	0.00016
c184_g192^b	SSA_1792	2,361.01	1,048.15	−1.30	0.00023
c368_g1^b	SSA_1686	698.70	346.62	−1.19	0.00034
c183_g102	SSA_1971	163.74	43.06	−1.77	0.00039
c185_g11^b^,^c^,^m	SSA_1538	501.04	212.97	−1.29	0.00045
c185_g232^c	SSA_1319	449.03	197.37	−1.25	0.00054
c185_g249^b^,^c	SSA_2347	1,513.35	707.94	−1.17	0.00057
c451_g1	SSA_2206	49.12	23.81	−1.43	0.00058
c185_g116^m	SSA_0447	837.36	429.13	−1.09	0.00073
c184_g217^b^,^c	SSA_0586	571.73	297.29	−1.07	0.00073
c239_g1	SSA_2184	105.81	52.60	−1.22	0.00084
c185_g204^b	SSA_1996	3,713.76	1,794.79	−1.12	0.00096
c143_g1^c	SSA_0829	468.71	243.16	−1.17	0.00099
c185_g126^b	SSA_0441	749.31	344.66	−1.25	0.00099
c185_g99^b^,^c^,^m	SSA_1998	6,630.45	3,358.26	−1.18	0.00115
c185_g158^b^,^c	SSA_2035	8,721.98	3,613.72	−1.39	0.00122
c185_g119	SSA_2345	1,569.92	800.80	−1.27	0.00123
c183_g133	SSA_0818	79.50	48.38	−1.08	0.00136
c184_g265^c	SSA_2188	422.17	187.22	−1.20	0.00138
c184_g124	SSA_1645	205.11	110.75	−1.06	0.00144
c185_g13^b^,^m	SSA_0851	315.14	121.60	−1.38	0.00149
c183_g68^b	SSA_0314	123.09	66.54	−1.06	0.00156
c185_g248	SSA_0169	686.51	304.62	−1.35	0.00165
c184_g269	SSA_0844	511.20	217.67	−1.23	0.00187
c183_g105^b^,^c	SSA_1223	6,575.54	2,568.83	−1.44	0.00189
c185_g132	SSA_0885^a	302.27	159.87	−1.04	0.00198
c185_g214^b	SSA_1992	6,628.39	2,941.07	−1.27	0.00261
c185_g31	SSA_0227	162.37	80.65	−1.07	0.00280
c184_g311	SSA_0701	1,885.59	1,157.84	−1.17	0.00304
c184_g332^c	SSA_2249	83.46	50.01	−1.12	0.00304
c184_g58^b	SSA_2205	3,704.78	1,616.27	−1.28	0.00339
c184_g126^b^,^c	SSA_1060	9,769.74	4,519.35	−1.29	0.00381
c377_g1^b^,^c^,^m	SSA_0716	176.63	98.16	−1.06	0.00384
c308_g1^c	SSA_0617	427.06	209.58	−1.06	0.00402
c204_g1	SSA_0016	34.59	19.85	−1.51	0.00570
c184_g117^b	SSA_2210	122.64	61.28	−1.05	0.00747
c185_g72^c	SSA_0167	148.20	77.07	−1.03	0.00815
c185_g137^b	SSA_2061	1,259.10	646.43	−1.06	0.00859
c185_g212^b^,^c	SSA_1520	63,068.97	28,654.30	−1.14	0.01051
c197_g1	SSA_1671	48.54	30.95	−1.02	0.01211
c185_g202	SSA_2067	367.77	186.16	−1.03	0.01220
c185_g63^b^,^c	SSA_1310	7,265.45	3,285.79	−1.11	0.01265
c184_g232	SSA_0723	193.60	102.67	−1.15	0.01310
c185_g257^b	SSA_2374	169.52	84.74	−1.01	0.01422
c184_g26^b^,^c^,^m	SSA_2133	145.08	92.99	−1.01	0.01598
c184_g30^b^,^c	SSA_2142	36.71	10.44	−1.55	0.03134

Genes associated with putative cre-sites.

GO classification:biological process(BP).

GO classification: cellular component(CC).

GO classification: molecular function(MF).