Table 2. Description of molecular marker panels used to estimate the genetic ancestry in the selected studies from different Brazilian regions.
Geographic region | Number of samples | Type of marker | Number of markers | Mean of Ancestry | REFERENCES | |||||
---|---|---|---|---|---|---|---|---|---|---|
EUR | EUR (weighted) | AFR | AFR (weighted) | AME | AME (weighted) | |||||
CW | 84 | INDEL | 46 | 59 | NA | 26 | NA | 15 | NA | 5 |
801 | SNP | 12 - 28 | 66 | 63.4 | 23 | 24.3 | 12 | 12.3 | 1,3,4 | |
N | 1622 | INDEL | 40 - 48 | 53 | 53.3 | 19 | 20.0 | 28 | 26.7 | 5, 7,8,9,10,11,12,13 |
507 | SNP | 8 - 48 | 42 | 42.7 | 24 | 22.0 | 30 | 35.4 | 6, 18 | |
681 | STR | 4 - 12 | 59 | 57.8 | 20 | 18.4 | 21 | 24.0 | 16,17,19 | |
NE | 2245 | INDEL | 9 - 46 | 63* | 62.9 | 25 | 28.3 | 11 | 8.9 | 5, 7, 13, 23, 24, 26 ,32 |
3528 | SNP | 8 - 331,790 | 49* | 48.7 | 29 | 34.5 | 21 | 16.7 | 21, 22, 25, 30, 33 | |
380 | STR | 4 - 8 | 51 | 51.1 | 26 | 26.5 | 24 | 22.4 | 26, 31 | |
S | 7116 | INDEL | 40 - 48 | 80 | 84.8 | 10 | 4.3 | 9 | 8.9 | 5, 7, 9, 34 |
3736 | SNP | 331,790 | 76 | NA | 16 | NA | 8 | NA | 25 | |
226 | STR | 12 | 82 | NA | 11 | NA | 7 | NA | 17 | |
SE | 4552 | INDEL | 40 - 61 | 71 | 72.7 | 19 | 17.8 | 9 | 8.4 | 5, 7, 13, 23, 36, 37, 44, 47, 48, 49, 50, 51 |
3202 | SNP | 14 - 331,790 | 65 | 73.4 | 25 | 18.5 | 8 | 7.1 | 25, 39, 40, 42, 43,45 | |
746 | STR | 18 - 34 | 71 | 72.1 | 24 | 23.3 | 5 | 4.6 | 17, 35, 41 |
NA - not applicable. * Statistically significant differences in the ancestry estimates related to type of marker (Spearman’s correlation test, P < 0.05). References: 1. Lins et al., 2011a; 3. Benedet et al., 2012; 4. Lins et al., 2011b; 5. Manta et al., 2013b; 6. Cardoso et al., 2014; 7. Pena et al., 2011; 8. Pereira et al., 2012; 9. Santos et al., 2010; 10. Carvalho et al., 2015; 11. Vieira et al., 2015; 12. Vieira-Machado et al., 2016; 13. Brito et al., 2011; 14. Cassiano et al., 2015; 15. Francez et al., 2011; 16. Francez et al., 2012; 17. Callegari-Jacques et al., 2003; 18. Kano et al., 2016; 19. França, 2005; 21. Silva et al., 2015; 22. Mychaleckyj et al., 2017; 23. Aquino et al., 2014; 24. do Rego Borges et al., 2015; 25. Kehdy et al., 2015; 26. Teló, 2010; 30. Nascimento et al., 2016; 31. Ferreira et al., 2002; 32. Lopes et al., 2014; 33. Coelho et al., 2015; 34. Wagner et al., 2016; 35. Scliar et al., 2009; 36. Rolim et al., 2016; 37. Brito et al., 2012; 39. Silva et al., 2010; 40. Queiroz et al., 2013; 41. Martins et al., 2011; 42. Nastri et al., 2016; 43. Bermardez-Pereira et al., 2016; 44. Cardena et al., 2013; 45. Guindalini et al., 2010; 47. Ramos et al., 2016; 48. Souza et al., 2015; 49. Manta et al., 2013a; 50. Santos et al., 2009; 51. Suarez-Kurtz et al., 2007.