Table 3. Statistics of the MD simulations.
System | Average number of waters | Average potential energy per water (kJ/mol) | Overall difference with bulk (kJ/mol) |
---|---|---|---|
No ligands | 20.2 | −93.4 | 0 |
Taurine | 17.5 | −94.4 | +234.7 |
MES | 10.2 | −88.2 | +987.0 |
ACES | 10.8 | −86.1 | +956.8 |
2-AEP | 10.5 | −87.7 | +965.83 |
Bulk Water | −92.2 | ||
System | Total number of waters | Total number of atoms | Initial box volume nm3 |
Apo protein | 11 058 | 48 783 | 381.08 |
Taurine | 11 846 | 51 943 | 417.73 |
MES | 10 824 | 48 379 | 377.69 |
ACES | 10 879 | 48 153 | 378.79 |
2-AEP | 11 065 | 48 827 | 376.11 |
Water properties in the binding site (top) and general parameters of the simulations (bottom).