Table 2.
Eleven a priori sorghum seed mass candidate genes that colocalized with outlier SNPs for both GLM of 100-seed mass and GLM of Prc.Dry.Q
| SNP IDa | Geneb | Gene Startb | Gene Endb | Genec | Orthologd |
|---|---|---|---|---|---|
| S1_4315232 | Sb01g005170 | 4275513 | 4279485 | Sobic.001G056700 | ZmO2 |
| S1_65251930 | Sb01g041900 | 65135319 | 65141117 | Sobic.001G445900 | OsCYP90B1 |
| S2_65532747 | Sb02g030640 | 65662195 | 65664496 | Sobic.002G272700 | AtEOD3 |
| S2_68333169 | Sb02g033830 | 68370266 | 68371629 | Sobic.002G308400 | MYB |
| S2_68333169 | Sb02g033940 | 68469057 | 68478741 | Sobic.002G309600 | AtUPF1 |
| S3_69399186 | Sb03g042060 | 69485282 | 69485858 | Sobic.003G380900 | OsSERF1 |
| S4_50682434 | Sb04g021540 | 50589773 | 50601467 | Sobic.004G163700 | ZmSbeIIb |
| S4_58788981 | Sb04g028690 | 58829498 | 58833664 | Sobic.004G247000 | ZmGln-4 |
| S6_56374341 | Sb06g027465 | 56363893 | 56367340 | Sobic.006G203400 | OsGS2 |
| S7_57962621 | Sb07g023040 | 57901670 | 57902598 | Sobic.007G156800 | OsSGL1 |
| S9_5395395 | Sb09g004510 | 5453946 | 5459014 | Sobic.009G053600 | OsGS5 |
aSNP ID includes the chromosome number (before the underscore) and position (after the underscore) in v1.4 coordinates
bGene name and position in v1.4 sorghum genome assembly
cGene name in v3.0 sorghum genome assembly
dDetails on orthologs in ref. (Tao et al. 2017)