Table 1.
SeMet-apo-SQR | SQR | SQR-CoQ1 | SQR-CoQ1 + sulfite | SQR-CoQ1 + sulfide | |
---|---|---|---|---|---|
Space group | P212121 | P212121 | P212121 | P212121 | P212121 |
Unit cell parameters (Å) | a=77.58 | a=76.729 | a=78.516 | a=76.11 | a=76.295 |
b=111.42 | b=110.424 | b= 111.512 | b=108.75 | b=111.768 | |
c=133.92 | c=132.124 | c=133.648 | c=131.06 | c=137.032 | |
α=β=γ=90° | α=β=γ=90° | α=β=γ=90° | α=β=γ=90° | α=β=γ=90° | |
Wavelength (Å) | 0.9786 | 1.12713 | 1.12713 | 1.12713 | 1.12713 |
Data collection statistics | |||||
Resolution range (Å) | 66.92–3.27 (3.33–3.27)* | 50.00–2.80 (2.85–2.80) | 51.46–2.03 (2.08–2.03) | 43.69–2.11 (2.16–2.11) | 50.00–2.55 (2.60–2.55) |
Number of unique reflections | 18411 (831) | 26934 (1198) | 73848 (4449) | 61813 (4480) | 38478 (1642) |
Completeness (%) | 99.72 (92.03) | 96.5 (89.1) | 96.9 (78.9) | 98.0 (97.3) | 99.2 (85.7) |
Rmerge | 0.508 (0.864) | 0.134 (0.747) | 0.184 (1.664) | 0.140 (1.300) | 0.202 (1.139) |
Rpim | 0.127 (0.306) | 0.077 (0.485) | 0.079 (0.798) | 0.065 (0.588) | 0.095 (0.522) |
CC1/2 | 0.315 (0.537) | 1.002 (0.568) | 0.875 (0.302) | 0.982 (0.637) | 0.984 (0.673) |
CC1/2(anom) | 0.091 (0.323) | ||||
Redundancy | 24.31 (9.87) | 3.6 (3.1) | 6.6 (5.8) | 5.6 (5.8) | 5.3 (5.4) |
Mean I/σ | 9.09 (2.24) | 11.7 (1.6) | 6.0 (1.3) | 6.4 (1.1) | 4.5 (1.3) |
Refinement statistics | |||||
Resolution range (Å) | 33.18–2.81 | 41.38–2.03 | 41.92–2.21 | 50.93–2.56 | |
Rwork/Rfree (%) | 21.74/27.32 | 22.01/25.53 | 19.02/22.60 | 22.41/27.19 | |
RMSD bonds (Å) | 0.005 | 0.007 | 0.012 | 0.005 | |
RMSD angles (deg) | 0.882 | 0.951 | 1.243 | 0.825 | |
Average B factor (Å2) | 48.8 | 24.8 | 30.6 | 34.1 | |
Number of water molecules | 30 | 191 | 101 | 41 | |
Ramachandran | 95 | 94 | 97 | 97 | |
favored (%) | |||||
allowed (%) | 5 | 6 | 3 | 3 | |
not allowed (%) | 0 | 0 | 0 | 0 | |
PDB ID | 6O15 | 6O1B | 6O1C | 6O16 |
Values in parentheses are for highest-resolution shell