Table 3.
Percentage identity of sequences (above the diagonal) and amino acid sequence (below the diagonal) between human and non-human primate (nucleotide region 55–11889).
| Strain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genotype | S27 | 1 | - | 94.0 | 94.0 | 94.0 | 94.0 | 93.9 | 93.9 | 94.1 | 94.1 | 94.0 | 94.0 | 94.0 | 94.1 | 94.5 | 94.2 | 95.2 | 97.1 | 97.1 | 97.1 | 85.0 | 73.9 |
| Non-Human primates isolate | M125 | 2 | 96.4 | - | 99.9 | 100.0 | 100.0 | 99.7 | 99.7 | 99.9 | 99.9 | 99.8 | 99.8 | 99.3 | 98.1 | 98.5 | 98.2 | 97.7 | 93.5 | 93.6 | 93.6 | 83.7 | 73.5 |
| M127 | 3 | 96.4 | 100.0 | - | 100.0 | 100.0 | 99.7 | 99.7 | 99.9 | 99.9 | 99.8 | 99.8 | 99.3 | 98.1 | 98.5 | 98.2 | 97.7 | 93.5 | 93.6 | 93.6 | 83.7 | 73.5 | |
| M128 | 4 | 96.4 | 100.0 | 100.0 | - | 99.9 | 99.7 | 99.7 | 99.9 | 99.9 | 99.8 | 99.8 | 99.3 | 98.1 | 98.5 | 98.2 | 97.7 | 93.5 | 93.6 | 93.6 | 83.7 | 73.5 | |
| M129 | 5 | 96.4 | 100.0 | 100.0 | 100.0 | - | 99.7 | 99.7 | 99.9 | 99.9 | 99.8 | 99.8 | 99.3 | 98.1 | 98.5 | 98.2 | 97.7 | 93.5 | 93.6 | 93.6 | 83.7 | 73.5 | |
| Asian | FN295483 | 6 | 96.5 | 99.9 | 99.9 | 99.9 | 99.9 | - | 100.0 | 99.7 | 99.7 | 99.6 | 99.7 | 99.4 | 98.0 | 98.4 | 98.1 | 97.5 | 93.3 | 93.5 | 93.5 | 83.5 | 73.5 |
| FN295484 | 7 | 96.5 | 99.9 | 99.9 | 99.9 | 99.9 | 100.0 | - | 99.7 | 99.7 | 99.6 | 99.7 | 99.4 | 97.9 | 98.3 | 98.0 | 97.5 | 93.3 | 93.4 | 93.4 | 83.5 | 73.5 | |
| EU703759 | 8 | 96.5 | 99.9 | 99.9 | 99.9 | 99.9 | 100.0 | 100.0 | - | 100.0 | 99.9 | 99.9 | 99.3 | 98.1 | 98.5 | 98.2 | 97.7 | 93.5 | 93.6 | 93.6 | 83.7 | 73.6 | |
| EU703760 | 9 | 96.5 | 99.9 | 99.9 | 99.9 | 99.9 | 100.0 | 100.0 | 100.0 | - | 99.9 | 99.9 | 99.3 | 98.1 | 98.5 | 98.2 | 97.7 | 93.5 | 93.6 | 93.6 | 83.7 | 73.6 | |
| EU703761 | 10 | 96.4 | 99.8 | 99.8 | 99.8 | 99.8 | 99.9 | 99.9 | 99.9 | 99.9 | - | 99.8 | 99.2 | 98.1 | 98.4 | 98.1 | 97.6 | 93.4 | 93.5 | 93.5 | 83.6 | 73.5 | |
| EU703762 | 11 | 96.4 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | - | 99.2 | 98.0 | 98.5 | 98.1 | 97.7 | 93.4 | 93.5 | 93.5 | 83.6 | 73.5 | |
| FJ807897 | 12 | 96.5 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.8 | 99.7 | 99.6 | - | 98.0 | 98.4 | 98.1 | 97.5 | 93.4 | 93.5 | 93.5 | 83.7 | 73.5 | |
| HM045800 | 13 | 97.0 | 99.1 | 99.1 | 99.1 | 99.1 | 99.1 | 99.1 | 99.2 | 99.2 | 99.1 | 99.0 | 99.8 | - | 98.7 | 99.2 | 97.7 | 93.6 | 93.8 | 93.7 | 83.6 | 73.5 | |
| HM045789 | 14 | 97.1 | 99.0 | 99.0 | 99.0 | 99.0 | 99.0 | 99.0 | 99.1 | 99.1 | 99.0 | 98.9 | 99.1 | 99.8 | - | 99.0 | 98.2 | 93.9 | 94.0 | 94.0 | 83.9 | 73.7 | |
| HM045802 | 15 | 96.8 | 98.7 | 98.7 | 98.7 | 98.7 | 98.7 | 98.7 | 98.8 | 98.8 | 98.7 | 98.6 | 98.8 | 99.4 | 99.4 | - | 97.9 | 93.6 | 93.8 | 93.8 | 83.9 | 73.9 | |
| EF027140 | 16 | 97.4 | 98.2 | 98.2 | 98.2 | 98.2 | 98.3 | 98.3 | 98.3 | 98.3 | 98.2 | 98.2 | 98.3 | 99.0 | 98.9 | 98.6 | - | 94.6 | 94.7 | 94.7 | 84.2 | 73.9 | |
| ECSA | FN295487 | 17 | 98.3 | 96.1 | 96.1 | 96.1 | 96.1 | 96.2 | 96.2 | 96.2 | 96.2 | 96.1 | 96.1 | 96.2 | 96.7 | 96.7 | 96.5 | 97.0 | - | 99.8 | 99.8 | 84.9 | 74.0 |
| FJ807896 | 18 | 98.3 | 96.2 | 96.2 | 96.2 | 96.2 | 96.2 | 96.2 | 96.2 | 96.2 | 96.2 | 96.1 | 96.2 | 96.7 | 96.7 | 96.5 | 97.0 | 99.9 | - | 99.9 | 84.9 | 74.0 | |
| EF027138 | 19 | 98.3 | 96.1 | 96.1 | 96.1 | 96.1 | 96.2 | 96.2 | 96.2 | 96.2 | 96.2 | 96.0 | 96.2 | 96.6 | 96.6 | 96.4 | 99.9 | 99.9 | 99.9 | - | 84.9 | 74.0 | |
| WA | AY726732 | 20 | 93.7 | 91.9 | 91.9 | 91.9 | 91.9 | 91.9 | 92.0 | 92.0 | 92.0 | 91.9 | 91.8 | 92.1 | 92.4 | 92.5 | 92.2 | 92.9 | 93.5 | 93.5 | 93.5 | - | 74.3 |
| ONN | SG650 | 21 | 84.9 | 84.3 | 84.3 | 84.3 | 84.3 | 84.3 | 84.4 | 84.3 | 84.3 | 84.2 | 84.2 | 84.4 | 84.8 | 84.7 | 84.4 | 84.7 | 85.1 | 85.2 | 85.2 | 86.2 | - |