Table 5.
Alignment of CHIKV nsP1 amino acid (209–233) sequences.
| Virus-Acession no.- country- year | nsP1 sequence (nucleotides 209–233) |
|---|---|
| 209 221 233 | |
| CHIKV-KM923920(M129)-Malaysia-2008 | NIGLCSTDLTEGGRGKLSIMR |
| CHIKV-KM923918(M127)-Malaysia-2008 | NIGLCSTDLTEGGRGKLSIMR |
| CHIKV-KM923919(M128)-Malaysia-2008 | NIGLCSTDLTEGGRGKLSIMR |
| CHIKV-KM923917(M125)-Malaysia-2008 | NIGLCSTDLTEGGRGKLSIMR |
| CHIKV- HM045803(I-634029)-India-1963 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045813(Gibbs263)-India-1963 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EF027140(IND-63-WB1)-India-1963 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045788(PO731460)-India-1973 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EF027141(IND-73-MH5)-India-1973 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045810(TH35)-Thailand-1958 | NIGLCSTDLTEGRLGKLSIMR |
| CHIKV- EF452493(AF15561)-Thailand-1962 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045814(1455)-Thailand-1975 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045789(6441)-Thailand-1988 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045787(SV0444)-Thailand-1995 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045802(K0146)-Thailand-1995 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045796(CO392)-Thailand-1995 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045791(JKT23574)-Indonesia-1983 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045797(RSU1)-Indonesia-1985 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045790(PhH15483)-Philippines-1985 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HM045800(Hu.85.NR.001)-Philippines-1985 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- FN295483(MY.37348)-Malaysia-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- FN295484(MY.37350)-Malaysia-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- HE806461(NC 2011-568)-NewCaledonia-2011 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KF872195(Leiv.Chik)-Russia-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWJV01000000(CK12-148)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWIC01000000(CK12-708)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CXNV01000000(CK12-709)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWHZ01000000(CK12-882)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWIE01000000(CK12-884)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWIJ01000000(CK12-906)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWHX01000000(CK12-559)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CXNT01000000(CK12-921)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- CWIF01000000(CK12-674)-Philippines-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KF318729(chik-sy)-China-2012 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KJ451623(3462)-Micronesia-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EU703759(MY002IMR)-Malaysia-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EU703760(MY003IMR)-Malaysia-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EU703761(MY019IMR)-Malaysia-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EU703762(MY021IMR)-Malaysia-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- AF369024(S27)-Tanzania-1953 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- AB455493(SL11131)-India-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- FJ807897(0706aTw)-Indonesia-2007 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- EU564334(TM25)-Mauritius-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KJ451622(3807)-Micronesia-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KJ451624(99659)-British Virgin Islands-2014 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- FJ000068(IND-KA51)-India-2006 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KT327164(CH0045)-Mexico-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KT327167(TA0006)-Mexico-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KT327165(CH0072)-Mexico-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- AB860301(CHIKV-13-112A)-Philippines-2013 | NIGLCSTDLTEGRRGKLSIMR |
| CHIKV- KX262991(H20235)-StMartin-2013 | NIGLCSTDLTEGRRGKLSIMR |