Bacterial and Virus Strains |
DH5α E.coli Competent
Cells |
New England Biolabs |
C2987H |
pM2rtTA lentivirus |
Gift from Donald Kohn’s lab |
|
Chemicals, Peptides, and
Recombinant Proteins |
Doxycycline hyclate |
Sigma-Aldrich |
D9891 |
Blasticidin S-HCl |
Thermo Fisher Scientific |
A1113902 |
Puromycin Dihydrochloride |
Thermo Fisher Scientific |
A1113802 |
Nonanedioic Acid |
Sigma-Aldrich |
246379 |
2-coumaranone |
Sigma-Aldrich |
124591 |
Decanoic Acid |
Sigma-Aldrich |
C1875 |
Acetophenone |
Sigma-Aldrich |
A10701 |
Prenyl Acetate |
Sigma-Aldrich |
W420201 |
Vanilic Acid |
Sigma-Aldrich |
H36001 |
Forskolin |
Sigma-Aldrich |
F3917 |
Critical Commercial Assays |
Dual-Glo Luciferase Assay System |
Promega |
E2920 |
White Poly-D-Lysine Coated 96-well Plates |
VWR |
89092–710 |
Lipofectamine 2000 |
Thermo-Fisher Scientific |
11668027 |
CD293 Medium |
Thermo-Fisher Scientific |
11913019 |
OptiMEM Medium |
Thermo-Fisher Scientific |
31985062 |
Qiashredder Tissue and Cell Homogenizer |
Qiagen |
79654 |
RNEasy MiniPrep Kit |
Qiagen |
74104 |
Superscript IV |
Thermo-Fisher Scientific |
18090010 |
HiFI MasterMix |
KAPA Biosystems |
KR0370 |
ZymoClean Gel DNA Recovery Kit |
Zymo Research |
D4001T |
Gibson Assembly HiFI Mastermix |
SGI-DNA |
Quote Needed |
MluI Restriction Enzyme |
New England Biolabs |
R3198 |
AgeI Restriction Enzyme |
New England Biolabs |
R3552 |
T4 DNA ligase |
New England Biolabs |
M0202S |
DNA Clean and Concentrator Kir |
Zymo Research |
D4013 |
Zyppy-96 Plasmid Miniprep Kit |
Zymo Research |
D4041 |
Lipofectamine 3000 |
Thermo Fisher Scientific |
L3000008 |
Quick-gDNA Miniprep kit |
Zymo Research |
D4074 |
SYBR FAST qPCR Master Mix |
Kapa Biosystems |
KR0389 |
Cells-to-cDNA II Lysis Buffer |
Thermo Fisher Scientific |
AM8723 |
DNase I |
New England Biolabs |
M0303S |
dNTPs |
New England Biolabs |
N0447 |
M-MuLV Reverse Transcriptase |
Enzymatics |
P7040 |
Rnase Inhibitor |
Enzymatics |
Y9240 |
NEB-Next Q5 Mastermix |
New England Biolabs |
M0544 |
Experimental Models: Cell
Lines |
Human: 293T Cells |
ATCC |
CRL-3216 |
Oligonucleotides |
Full list of primers is presented in Table S4
|
|
|
Recombinant DNA |
pCRE-Luc |
Stratagene |
219076 |
pRL-SV40 |
Promega |
E2231 |
pCI |
Promega |
E1731 |
Super PiggyBac Transposase |
Systems Bioscience |
PB210PA-1 |
|
|
|
Software and Algorithms |
sklearn |
Pedregosa et
al., 2011
|
http://scikit-learn.org
|
EdgeR |
Robinson et al., 2010 |
https://bioconductor.org/packages/release/bioc/html/edgeR.html
|