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. 2019 Dec 6;10:2774. doi: 10.3389/fmicb.2019.02774

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Copyright © 2019 Yuan, Yin, Wang, Qian, Wei, Zhang, Jiang and Liu.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Core genome-based phylogeny. (A) Maximum likelihood tree was constructed using PhyML based on 1450 single-copy core genes shared by 129 Citrobacter strains. Different group are shown in different colors. (B) Neighbor Net (NNet) splits graphs based on uncorrected p-distances inferred from 1450 single-copy core genes shared by 129 Citrobacter strains. NNet splits graphs were constructed and visualized with SplitsTree4. Different group are shown in different colors, which was corresponding to our phylogenetic tree.