Table 1.

Alignment summary of CLas sample reads to the genome of CLas strain Psy62 using bowtie2.

ID	Enriched	Total Reads	Total Aligned Reads	Alignment Rate (%)	Fold Enrichment	Coverage (%)	Sequence Coverage
LHCA20	Yes	2,634,608	1,178,690	44.74	497	99.70	295X
	No	6,109,250	5,494	0.09		64.90	1.3X
LHCA22	Yes	3,486,268	2,121,784	60.86	4631	99.80	505X
	No	7,069,576	929	0.01		16.80	0.2X
LHCA26	Yes	3,299,660	691,607	20.96	45113	99.40	165X
	No	7,102,694	33	0.00		0.50	0X
LHCA28	Yes	3,277,008	328,121	10.01	19165	99.30	72X
	No	4,019,510	21	0.00		0.40	0X
SGCA20	Yes	1,467,124	1,089,745	74.28	1068	99.50	258X
	No	6,888,648	4,790	0.07		60.60	1.2X
SGCA22	Yes	3,093,380	2,302,812	74.44	4444	99.50	551X
	No	7,450,500	1,248	0.02		21.70	0.3X