Table 2.
Relative proportions of sequences and ASVs belonging to the most abundant (≥4%) phyla and genera in the gill and skin microbiomes of the seabass Dicentrarchus labrax in healthy, diseased, treatment and recovery states.
| Sequences (%) | ASVs (%) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Healthy | Diseased | Treatment | Recovery | Healthy | Diseased | Treatment | Recovery | ||
| GILL | Phylum | ||||||||
| Bacteroidetes | 30 | 21 | 19 | 26 | 22 | 21 | 21 | 23 | |
| Proteobacteria | 51 | 58 | 59 | 52 | 39 | 40 | 42 | 38 | |
| Verrucomicrobia | 12 | 7 | 5 | 8 | 2 | 2 | 2 | 2 | |
| Genus | |||||||||
| NS3a marine group | 8 | 5 | 8 | 10 | 0.3 | 0.4 | 0.4 | 0.3 | |
| Photobacterium | 0.2 | 5 | 0.1 | 1 | 0.2 | 1 | 0.4 | 0.4 | |
| Polaribacter 4 | 11 | 7 | 4 | 8 | 0.4 | 0.4 | 0.2 | 0.2 | |
| Polynucleobacter | 0.2 | 4 | 7 | 4 | 1 | 1 | 0.5 | 0.3 | |
| Pseudomonas | 15 | 9 | 9 | 6 | 1 | 1 | 1 | 1 | |
| Rubritalea | 10 | 5 | 4 | 6 | 0.2 | 1 | 0.1 | 0.2 | |
| Stenotrophomonas | 5 | 3 | 2 | 2 | 0.4 | 0.3 | 0.2 | 0.2 | |
| TOTAL | 2490 | 17743 | 25552 | 23076 | 1439 | 978 | 837 | 2171 | |
| SKIN | Phylum | ||||||||
| Bacteroidetes | 34 | 19 | 32 | 36 | 24 | 24 | 23 | 25 | |
| Proteobacteria | 54 | 72 | 52 | 50 | 39 | 44 | 36 | 38 | |
| Verrucomicrobia | 5 | 1 | 3 | 4 | 2 | 2 | 2 | 2 | |
| Genus | |||||||||
| NS3a marine group | 9 | 6 | 11 | 11 | 1 | 1 | 1 | 1 | |
| Polaribacter 4 | 12 | 5 | 6 | 9 | 0.5 | 1 | 0.3 | 1 | |
| Pseudoalteromonas | 0.1 | 1 | 5 | 1 | 0.1 | 0.4 | 0.2 | 0.1 | |
| Pseudomonas | 25 | 45 | 16 | 22 | 2 | 7 | 1 | 2 | |
| Stenotrophomonas | 8 | 12 | 6 | 8 | 1 | 2 | 0.3 | 1 | |
| TOTAL | 29110 | 27438 | 28598 | 27453 | 1433 | 530 | 1180 | 2160 | |
Total number of sequences and ASVs are absolute values comprising all samples of a given group.