Antibodies |
|
KZ52 |
Maruyama et al., 1999; IBT Bioservices |
0260-001 |
1H3 |
Qiu et al., 2011; David DiLillo |
N/A |
c13C6 |
Wilson et al., 2000; David DiLillo |
N/A |
h13F6 |
Wilson et al., 2000; IBT Bioservices |
0201-022 |
StrepMAB-Classic |
IBA Life Sciences |
2-1507-001; RRID:AB_513133
|
anti-human CD19 eFluor 450 |
ThermoFisher |
48-0198-42; RRID:AB_11220071
|
anti-human IgD Brilliant Violet 510 |
BioLegend |
348220; RRID: AB_2561945
|
anti-human CD38 Brilliant Violet 605 |
BioLegend |
303532; RRID: AB_2562915
|
anti-human CD71 PE |
BioLegend |
334106; RRID: AB_2201481
|
anti-human CD3 Alexa 700 |
BioLegend |
344822; RRID:AB_2563420
|
anti-human CD27 PerCP-Cy5.5 |
BD Biosciences |
560612; RRID:AB_1727457
|
anti-human CD20 PE-Cy7 |
BD Biosciences |
560735; RRID:AB_1727450
|
Goat anti-human IgG-PE |
Southern Biotech |
2040-09; RRID:AB_2795648
|
F(ab’)2Goat Anti-Human IgG (Fcγ) HRP
|
Jackson ImmunoResearch |
109-036-098 |
F(ab’)2 Goat anti-human IgM (μ-chain) HRP |
Jackson ImmunoResearch |
109-036-129 |
F(ab’)2 Goat anti-human IgA (α-chain) HRP |
Jackson ImmunoResearch |
109-036-011 |
Mouse anti human IgG1 Fc-HRP |
Southern Biotech |
9054-05; RRID:AB_2796627
|
Mouse anti human IgG2 Fc-HRP |
Southern Biotech |
9060-05; RRID:AB_2796633
|
Mouse anti human IgG3 Hinge-HRP |
Southern Biotech |
9210-05; RRID:AB_2796699
|
Mouse anti human IgG4 Fc-HRP |
Southern Biotech |
9200-05; RRID:AB_2796691
|
|
Bacterial and Virus Strains |
|
Ebola ΔVP30-RenLuc virus |
Halfmann et al., 2008 |
N/A |
Mouse-adapted Ebola virus |
Bray et al., 1999 |
N/A |
NEB Stable cells |
New England Biolabs |
C3040H |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Alexa Fluor 488 Protein Labeling Kit |
ThermoFisher |
A10235 |
Alexa Fluor 647 Protein Labeling Kit |
ThermoFisher |
A20173 |
Alexa Fluor 405 NHS Ester |
ThermoFisher |
A30000 |
Live/Dead Fixable Near-IR Dead Cell Stain Kit |
ThermoFisher |
L10119 |
Lightning-Link (R) R-PE Antibody Labeling Kit |
Novus Bio |
703-0015 |
Ebola virus glycoprotein ectodomain (GPec) |
Fusco et al., 2015 |
N/A |
Ebola virus delta mucin glycoprotein ectodomain (GPΔmuc) |
Fusco et al., 2015 |
N/A |
Ebola virus cleaved glycoprotein ectodomain (GPcl) |
Fusco et al., 2015 |
N/A |
Ebola virus secreted glycoprotein (sGP) |
Fusco et al., 2015 |
N/A |
Ebola matrix protein (VP40) |
Bornholdt et al., 2013 |
N/A |
NP N-terminal domain |
Kirchdoerfer et al., 2015 |
N/A |
NP C-terminal domain |
Kirchdoerfer et al., 2016 |
N/A |
VP35 |
Kirchdoerfer et al., 2015 |
N/A |
VP30 |
Kirchdoerfer et al., 2016 |
N/A |
Bundibugyo virus glycoprotein |
IBT Bioservices |
0505-015 |
Sudan virus glycoprotein |
IBT Bioservices |
0502-015 |
Reston virus glycoprotein |
IBT Bioservices |
0504-015 |
Ebola GP 15-mer peptide library |
McElroy et al., 2015 |
N/A |
SMCC activated cross-linked APC |
Anaspec |
AS-72108 |
MPER peptide (GP630-649-Cys) |
Genscript |
Custom synthesis |
EZ-Link Sulfo-NHS-LC-LC-Biotin |
ThermoFisher |
A35358 |
Avidin D-HRP |
Vector Labs |
A2004 |
TempliPhi100 kit |
GE Healthcare |
25-6400-10 |
Thermolysin |
Promega |
V4001 |
|
Critical Commercial Assays |
|
BLC Human ProcartaPlex Simplex Kit |
ThermoFisher |
EPX01A-12147-901 |
Immune Repertoire Capture technology |
Atreca |
N/A |
|
Deposited Data |
|
IGH repertoire sequencing data from EVD donors |
This paper |
Bioproject: PRJNA531326 |
mAb sequences |
This paper |
Bioproject: PRJNA531326 |
AbVec6W vector sequences |
This paper |
Bioproject: PRJNA531326 |
pNL-GP vector sequence |
This paper |
Bioproject: PRJNA531326 |
|
Experimental Models: Cell Lines |
|
Human: Expi293F |
ThermoFisher |
Cat # A14527; RRID:CVCL_D615 |
Human: Jurkat E6-1 |
ATCC |
Cat # TIB152; RRID:CVCL_0367 |
Monkey: Vero |
ATCC |
Cat # CRL-1586; RRID:CVCL_0574 |
Monkey: Vero VP30 |
Halfmann et al., 2008 |
N/A |
|
Experimental Models: Organisms/Strains |
|
Mouse: Female BALB/c |
Charles River |
Strain Code: 28 |
|
Oligonucleotides |
|
Multiplex antibody cloning primer set |
Smith et al., 2009 |
N/A |
BIOMED2 IGHV framework primers |
Langerak et al., 2012 |
N/A |
Isotype-specific primers for IgA, IgM, IgG |
Roskin et al., 2015 |
N/A |
|
Recombinant DNA |
|
psPax2 |
Addgene |
RRID:Addgene_12260 |
pMD2.G |
Addgene |
RRID:Addgene_12259 |
pNL(CMV)EGFP/CMV/WPREΔU3 |
Ou et al., 2012; Addgene |
RRID:Addgene_41790 |
pNL-sGPC |
Kulkarni et al., 2014 |
N/A |
Ebola GP (Makona strain) |
Sino Biological |
VG40442-UT |
AbVec antibody expression vectors |
Smith et al., 2009 |
N/A |
pcDNA6.2-GW/EmGFP-miR |
ThermoFisher |
K493600 |
|
Software and Algorithms |
|
The PyMOL Molecular Graphics System, Version 1.8 |
Schrödinger |
N/A |
GraphPad Prism 6 |
GraphPad Software |
N/A |
IgBLAST |
Ye et al., 2013 |
https://www.ncbi.nlm.nih.gov/igblast/ |
IMGT V Quest |
Brochet et al., 2008 |
http://www.imgt.org/ |
FLASH |
Magoč and Salzberg, 2011 |
http://www.cbcb.umd.edu/software/flash/ |
cd-hit |
Fu et al., 2012 |
http://cd-hit.org/ |
Skylign |
Wheeler et al., 2014 |
http://skylign.org/ |
R |
R Development Core Team, 2017 |
https://www.R-project.org/ |
|
Other |
|
Maxisorp 96 well ELISA plates |
ThermoFisher |
44-2404-21 |
Clona-cell-TCS medium |
Stem Cell Technologies |
03814 |