Table 2.
Extent of Relatedness Between the Consensus Sequence (NABCon) and the 11 Envelope Sequences from Clinical Samples, and 2 Reference Sequences (HXB2 and pIndie)
| S. no. | Consensus sequence vs. clinical samples | Identity (%) | Positives (%) | Gaps (%) |
|---|---|---|---|---|
| 1 | NAB001 | 661/873 (76) | 741/873 (84) | 26/873 (2) |
| 2 | NAB016 | 728/864 (84) | 776/864 (89) | 24/864 (2) |
| 3 | NAB033 | 739/875 (84) | 792/875 (90) | 22/875 (2) |
| 4 | NAB046 | 745/872 (85) | 789/872 (90) | 23/872 (2) |
| 5 | NAB059 | 719/863 (83) | 775/863 (89) | 8/863 (0) |
| 6 | NAB062 | 735/862 (85) | 781/862 (90) | 14/862 (1) |
| 7 | NAB063 | 732/861 (85) | 777/861 (90) | 12/861 (1) |
| 8 | NAB065 | 730/872 (84) | 777/872 (89) | 17/872 (1) |
| 9 | NAB069 | 725/874 (83) | 778/874 (89) | 14/874 (1) |
| 10 | NAB120 | 742/870 (85) | 785/870 (90) | 21/870 (2) |
| 11 | NAB122 | 763/868 (88) | 799/868 (92) | 8/868 (0) |
| 12 | pIndie | 775/864 (90) | 808/864 (93) | 11/864 (1) |
| 13 | HXB2 | 654/871 (75) | 743/871 (85) | 26/871 (2) |
| 14 | HXB2 vs. pIndie | 630/867 (73) | 730/867 (84) | 21/867 (2) |
| 15 | NAB062 vs. pIndie | 700/859 (81) | 758/859 (88) | 11/859 (1) |
| 16 | NAB062 vs. HXB2 | 630/860 (73) | 727/860 (84) | 14/860 (1) |