Table 2.

Precision, sensitivity of multiple tools on different coverage data. P indicates precision. S indicates sensitivity

Tool	12×		24×		36×		48×
	P	S	P	S	P	S	P	S
Pindel	0.18	0.80	0.45	0.50	0.33	0.60	0.40	0.48
BreakDancer	0.50	0.86	0.39	0.51	0.68	0.63	0.70	0.46
Delly	0.30	0.83	0.43	0.57	0.69	0.51	0.76	0.38
CNVnator	0.17	0.18	0.36	0.20	0.61	0.59	0.75	0.74
Breakseq2	0.69	0.71	0.71	0.75	0.80	0.79	0.86	0.85
Lumpy	0.13	0.87	0.21	0.93	0.32	0.82	0.42	0.73
GenomeStrip2	0.36	0.42	0.82	0.69	0.86	0.78	0.75	0.60
SVseq2	0.57	0.28	0.43	0.22	0.30	0.33	0.23	0.36
DeepSV	0.72	0.81	0.85	0.89	0.91	0.92	0.93	0.90