Table 1.
V4-16S rDNA analysis of the percent relative abundances of members of consortium A and consortium B in the fecal microbiota of recipient gnotobiotic mice
| ASV | Family | Genus | Species | Consortium A | Consortium B | ||
|---|---|---|---|---|---|---|---|
| dpg 18 | dpg 32 | dpg 18 | dpg 32 | ||||
| Percent relative abundance (± standard deviation) | |||||||
| ASV1 | Ruminococcaceae | Subdoligranulum | 1.7 ± 0.7 | 2.1 ± 0.7 | 3.3 ± 0.5 | 3.7 ± 0.9 | |
| ASV2 | Verrucomicrobiaceae | Akkermansia | 2 ± 0.7 | 2.1 ± 1.1 | 0 ± 0 | 0 ± 0 | |
| ASV3 | Rikenellaceae | Alistipes | shahii | 0.2 ± 0.1 | 0.2 ± 0.1 | 0 ± 0 | 0 ± 0 |
| ASV4 | Bacteroidaceae | Bacteroides | 9.7 ± 5.4 | 10.4 ± 1.5 | 0 ± 0 | 0 ± 0 | |
| ASV5 | Bacteroidaceae | Bacteroides | massiliensis | 2.9 ± 1.3 | 1.4 ± 0.6 | 3.6 ± 8.8 | 3.4 ± 8.3 |
| ASV6 | Bacteroidaceae | Bacteroides | uniformis | 6.7 ± 4.5 | 5 ± 1.9 | 0 ± 0 | 0 ± 0 |
| ASV7 | Bacteroidaceae | Bacteroides | 6.6 ± 3.9 | 6.5 ± 3.8 | 0 ± 0 | 0 ± 0 | |
| ASV8 | Bacteroidaceae | Bacteroides | caccae | 5.4 ± 3.2 | 5.3 ± 3.6 | 0 ± 0 | 0 ± 0 |
| ASV9 | Bacteroidaceae | Bacteroides | 6.9 ± 5.7 | 6.4 ± 3.8 | 0 ± 0 | 0 ± 0 | |
| ASV10 | Bacteroidaceae | Bacteroides | ovatus | 5.5 ± 2.6 | 4.1 ± 1.6 | 8.8 ± 6.9 | 9.2 ± 4.6 |
| ASV11 | Bacteroidaceae | Bacteroides | ovatus | 8.5 ± 2.9 | 7.2 ± 3.2 | 14.1 ± 11 | 14.1 ± 7.1 |
| ASV12 | Bacteroidaceae | Bacteroides | ovatus | 2.2 ± 0.8 | 2.1 ± 1.1 | 0 ± 0 | 0 ± 0 |
| ASV13 | Porphyromonadaceae | Parabacteroides | 0 ± 0 | 0 ± 0 | 3.5 ± 1.6 | 2.8 ± 1.6 | |
| ASV14 | Porphyromonadaceae | Parabacteroides | 0 ± 0 | 0 ± 0 | 3.5 ± 1.8 | 3 ± 1.5 | |
| ASV15 | Porphyromonadaceae | Parabacteroides | distasonis | 4 ± 1.9 | 4.8 ± 1.7 | 11.1 ± 5.7 | 9.6 ± 5.3 |
| ASV16 | Porphyromonadaceae | Parabacteroides | distasonis | 1.3 ± 2.2 | 0.9 ± 1.3 | 8.2 ± 4.2 | 7.3 ± 4.2 |
| ASV17 | Porphyromonadaceae | Parabacteroides | merdae | 3.3 ± 1.2 | 3.9 ± 0.8 | 0 ± 0 | 0 ± 0 |
| ASV18 | Rikenellaceae | Alistipes | putredinis | 2 ± 0.2 | 1.7 ± 0.5 | 0 ± 0 | 0 ± 0 |
| ASV19 | Enterobacteriaceae | Escherichia | 0.7 ± 0.5 | 1.6 ± 0.7 | 0 ± 0 | 0 ± 0 | |
| ASV20 | Porphyromonadaceae | Butyricimonas | paravirosa | 0.4 ± 0.3 | 0.4 ± 0.2 | 0 ± 0 | 0 ± 0 |
| ASV21 | Ruminococcaceae | Butyricicoccus | 0.5 ± 0.2 | 0.3 ± 0.1 | 0 ± 0 | 0 ± 0 | |
| ASV22 | Catabacteriaceae | Catabacter | hongkongensis | 0.2 ± 0.1 | 0.2 ± 0.1 | 0 ± 0 | 0 ± 0 |
| ASV23 | Ruminococcaceae | Anaerotruncus | colihominis | 0.2 ± 0.1 | 0.2 ± 0.1 | 0 ± 0 | 0 ± 0 |
| ASV24 | Coriobacteriaceae | Eggerthella | lenta | 0 ± 0 | 0 ± 0 | 0.1 ± 0.1 | 0.2 ± 0.1 |
| ASV25 | Ruminococcaceae | Ruminococcus | bicirculans | 0.2 ± 0.1 | 0.3 ± 0.1 | 0 ± 0 | 0 ± 0 |
| ASV26 | Ruminococcaceae | Clostridium | 0.1 ± 0.1 | 0.1 ± 0.1 | 0 ± 0 | 0 ± 0 | |
| ASV27 | Eubacteriaceae | Eubacterium | 3.1 ± 2 | 3.4 ± 1 | 0 ± 0 | 0 ± 0 | |
| ASV28 | Lachnospiraceae | Clostridium | lactatifermentans | 0 ± 0 | 0 ± 0 | 1.4 ± 0.4 | 1.3 ± 0.5 |
| ASV29 | Lachnospiraceae | Anaerostipes | caccae | 0 ± 0 | 0 ± 0 | 1.1 ± 0.4 | 1.2 ± 0.3 |
| ASV30 | Lachnospiraceae | Blautia | 0 ± 0 | 0 ± 0 | 16.6 ± 6.9 | 18.6 ± 8.6 | |
| ASV31 | Lachnospiraceae | Blautia | 0 ± 0 | 0 ± 0 | 2.5 ± 2.8 | 3 ± 2.9 | |
| ASV32 | Lachnospiraceae | Blautia | 0 ± 0 | 0 ± 0 | 3.1 ± 3.5 | 3.7 ± 3.5 | |
| ASV33 | Lachnospiraceae | 0 ± 0 | 0 ± 0 | 0.2 ± 0.1 | 0.2 ± 0.1 | ||
| ASV34 | Lachnospiraceae | Clostridium | 0 ± 0 | 0 ± 0 | 1.5 ± 1 | 1.3 ± 0.9 | |
| ASV35 | Lachnospiraceae | Clostridium | 0 ± 0 | 0 ± 0 | 7 ± 3.6 | 6.3 ± 3 | |
| ASV36 | Lachnospiraceae | Clostridium | 2.8 ± 1.5 | 3.4 ± 0.5 | 1.7 ± 0.4 | 1.8 ± 0.5 | |
| ASV37 | Lachnospiraceae | Clostridium | aldenense | 0.8 ± 0.4 | 0.9 ± 0.2 | 0.3 ± 0.3 | 0.4 ± 0.2 |
| ASV38 | Lachnospiraceae | Hungatella | 4.1 ± 1.7 | 4.5 ± 1.2 | 0 ± 0 | 0 ± 0 | |
| ASV39 | Lachnospiraceae | Clostridium | 0.4 ± 0.4 | 0.5 ± 0.1 | 0 ± 0 | 0 ± 0 | |
| ASV40 | Coriobacteriaceae | Collinsella | aerofaciens | 1.3 ± 0.6 | 1.8 ± 0.5 | 0 ± 0 | 0 ± 0 |
| ASV41 | Peptostreptococcaceae | Terrisporobacter | 0.3 ± 0.3 | 0.8 ± 0.7 | 0 ± 0 | 0 ± 0 | |
| ASV42 | Bifidobacteriaceae | Bifidobacterium | 1.1 ± 1.3 | 1.2 ± 1.1 | 0 ± 0 | 0 ± 0 | |
| ASV43 | Bifidobacteriaceae | Bifidobacterium | 1.2 ± 2.1 | 0.4 ± 0.6 | 0.2 ± 0.1 | 0.4 ± 0.4 | |
| ASV44 | Sutterellaceae | Parasutterella | excrementihominis | 5.2 ± 1.4 | 6 ± 1.4 | 0 ± 0 | 0 ± 0 |
| ASV45 | Sutterellaceae | Parasutterella | 0.8 ± 0.2 | 0.9 ± 0.3 | 0 ± 0 | 0 ± 0 | |
| ASV46 | Ruminococcaceae | Clostridium | 0.3 ± 0.2 | 0.4 ± 0.1 | 0 ± 0 | 0 ± 0 | |
| ASV47 | Erysipelotrichaceae | 0.7 ± 0.4 | 0.9 ± 0.2 | 0.7 ± 0.2 | 0.9 ± 0.2 | ||
| ASV48 | Ruminococcaceae | Flavonifractor | 0.3 ± 0.1 | 0.4 ± 0.1 | 0 ± 0 | 0 ± 0 | |
| ASV49 | Ruminococcaceae | Flavonifractor | plautii | 1.4 ± 0.2 | 1.5 ± 0.3 | 2.3 ± 0.6 | 2.2 ± 0.3 |
| ASV50 | Ruminococcaceae | Acetanaerobacterium | 1.7 ± 0.7 | 1.5 ± 0.4 | 0 ± 0 | 0 ± 0 | |
| ASV51 | Ruminococcaceae | Clostridium | 1 ± 0.4 | 1.1 ± 0.3 | 0 ± 0 | 0 ± 0 | |
| ASV52 | Enterococcaceae | Enterococcus | 0 ± 0 | 0 ± 0 | 0.6 ± 0.2 | 0.8 ± 0.6 | |
| ASV53 | Enterococcaceae | Enterococcus | 0.6 ± 0.3 | 1.3 ± 1.9 | 0.8 ± 0.9 | 1.6 ± 1.1 | |
| ASV54 | Ruminococcaceae | Pseudoflavonifractor | 0.3 ± 0.2 | 0.3 ± 0.1 | 0 ± 0 | 0 ± 0 | |
| ASV55 | Lachnospiraceae | 0.9 ± 0.4 | 1.1 ± 0.2 | 0 ± 0 | 0 ± 0 | ||
| ASV56 | Lachnospiraceae | Ruminococcus | 0.6 ± 0.3 | 0.7 ± 0.2 | 0 ± 0 | 0 ± 0 | |
| ASV57 | Lachnospiraceae | Ruminococcus | 0 ± 0 | 0 ± 0 | 3.5 ± 1 | 3 ± 1.2 | |