Table 3.

Genes upregulated by TCP for 8 days

RefSeq No.	Title	p value	Fold Changes	Amount of NR response elements, TSS ±5 kb
NM_008553.2	Ascl1	0.00149	2.2	4
NM_009755.2	Bmp1	0.01695	1.7	4
NM_173404.1	Bmp3	0.01011	1.6	2
NM_007560.3	Bmpr1b	0.00745	2.2	6
NM_007631.1	Ccnd1	0.00499	2.2	0
NM_009876.2	Cdkn1c	0.00022	2.2	2
NM_007670.2	Cdkn2b*	0.00236	2.2	3
NM_007671.2	Cdkn2c	0.03855	2.2	3
NM_015814.2	Dkk3	0.00364	1.8	3
NM_007865.2	DII1	0.00008	3.0	1
NM_172442.2	Dtx4	0.00659	2.6	5
NM_207655.1	Egfr	0.00022	2.9	6
NM_173447.2	Ephb1	0.00012	3.2	2
NM_008003	Fgf15	0.00201	2.0	4
NM_148935.1	Foxn4	0.00029	2.8	5
NM_008047.2	Fstl1	0.00017	2.6	5
NM_020510.2	Fzd2	0.00801	2.3	1
NM_021458.1	Fzd3	0.00092	2.0	1
NM_008058.1	Fzd8	0.02267	1.7	3
NM_008235.2	Hes1	0.00144	1.8	9
NM_010419.2	Hes5	0.00020	3.0	7
NM_019479.2	Hes6	0.00531	1.6	5
NM_013904.1	Hey2	0.00738	1.6	6
NM_010515.1	Igf2r	0.02033	1.7	4
NM_010517.2	Igfbp4	0.00043	2.6	1
NM_010518.2	Igfbp5*	0.00206	2.2	4
NM_018826.2	Irx5	0.00283	2.0	4
NM_022428	Irx6	0.00009	16.5	4
NM_008675.1	Nbl1	0.00101	2.0	4
NM_009718.2	Neurog2	0.03539	2.2	3
NM_033217.3	Ngfr	0.00114	1.8	2
NM_152229.1	Nr2e1	0.00416	1.9	0
NM_025980.1	Nrarp	0.00015	2.4	1
NM_019971	Pdgfc	0.00062	2.3	4
NM_198932.2	Pou2f1	0.00252	2.0	3
NM_021340.2	Rgr*	0.00511	3.4	4
NM_009107.2	Rxrg*	0.01004	1.5	4
NM_016769.2	Smad3*	0.00002	4.4	2
NM_176996.3	Smo	0.00339	1.8	1
NM_011443.2	Sox2*	0.02680	1.8	1
NM_009238.2	Sox4	0.00917	1.8	3
NM_011444.1	Sox5	0.00324	2.7	4
NM_011448.2	Sox 9	0.00048	3.0	3
NM_011486.2	Stat3	0.01235	1.6	1
NM_011535.2	Tbx3	0.02636	1.8	7
NM_009335.1	Tfap2c*	0.00018	2.3	3
NM_011565.2	Tead2	0.00175	1.9	3
NM_009368.1	Tgfb3	0.00161	2.2	2
NM_009372.2	Tgif*	0.02751	2.3	5
NM_011600.2	Tle4	0.00804	2.0	5
NM_054068.2	Vsx1	0.00087	10.1	2
NM_007701.2	Vsx2	0.00141	2.6	4
NM_009524.2	Wnt5a	0.01051	2.1	6
NM_009525.2	Wnt5b	0.00022	2.7	5
NM 009534.1	Yap1	0.00050	2.6	6

^*Statistically significant upregulation after 24 h and 8 days TCP treatment