Table 2. Sequences and G-scores of 2 x 4 and 3 x 4 G-quadruplex regions located on the ribosomal surface of the Homo sapiens 28S rRNA (LSU).
Number | Region | LSU rRNA Sequence (5’ to 3’) | Highest G-score |
---|---|---|---|
1 | ES7-a | GGCGGCGGGUCCGGCCGUGUCGGCGGCCCGGCGG | 20 |
2 | ES7-a | GGGGGCGGGCUCCGGCGGGUGCGGGGGUGGGCGGGCGGGGCCGGGGGUGGGGUCGGCGGGGG | 60 |
3 | ES7-b | GGCGGGGAAGGUGGCUCGGGGGG | 19 |
4† | ES7-b | GGGAGGGCGCGCGGGUCGGGGCGGCGGCGGCGGCGGCGGUGGCGGCGGCGGCGGCGGCGGCGGG | 38 |
5 | ES7-g | GGGCCCGGGGGAGGUUCUCUCGGGG | 19 |
6 | ES12 | GGCUCGCUGGCGUGGAGCCGGGCGUGG | 20 |
7 | ES15 | GGACGGGAGCGGCGGGGGCGG | 21 |
8 | ES15 | GGAGGGCGGCGGCGGCGGCGGCGGCGGGGGUGUGGGG | 21 |
9 | H63 | GGGCUGGGUCGGUCGGGCUGGGG | 38 |
10† | ES27-a |
GGGGGAGCGCCGCGUGGGGGCGGCGGCGGGGGGAGAAGGGUCGGGGCGGCAGGGGCCGGCGGC GGCCCGCCGCGGGGCCCCGGCGGCGGGGGCACGG |
40 |
11 | ES27-a | GGGGGGCCCGGGCACCCGGGGGGCCGGCGGCGGCGGCGACUCUGG | 37 |
12* | ES27-b | GGCGGGCGUCGCGGCCGCCCCCGGGGAGCCCGGCGGGCGCCGG | 20 |
13 | ES27-b | GGGGGCGGGGAGCGGUCGGGCGGCGGCGGUCGGCGGGCGGCGGGGCGGGGCGG | 21 |
14 | ES27-b | GGCGCGCGGCGGCGGCGGCGGCAGGCGGCGGAGGGGCCGCGGGCCGG | 21 |
15 | ES30 | GGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGG | 21 |
16 | ES39 | GGGACCGGGGUCCGGUGCGG | 20 |
17 | ES39 | GGGAAACGGGGCGCGGCCGGAGAGGCGG | 20 |
*This region contains a loop longer than 7 nucleotides
† These regions meet both 3 x 4 and 2 x 4 criteria.