TABLE 2.
Differential abundance of transcripts encoding hydrogenase subunits and regulatory proteins in “Ca. Endoriftia persephone”
| Hydrogenase type | Predicted proteina | β (qval)d |
|||
|---|---|---|---|---|---|
| H2/ΣH2Sb |
Low O2/high O2c |
||||
| High O2 | Low O2 | H2 | ΣH2S | ||
| Type 1e | HypD | 1.12 (4.0 × 10−3) | 0.80 (2.1 × 10−2) | ||
| 1e maturation protein | 1.28 (3.0 × 10−2) | ||||
| HyaF | 2.73 (4.8 × 10−4) | 1.53 (4.60 × 10−2) | 2.30 (6.5 × 10−4) | ||
| 1e small subunit | 3.74 (4.8 × 10−23) | 3.73 (8.7 × 10−35) | |||
| Isp1 | 3.66 (5.9 × 10−8) | 3.34 (7.7 × 10−17) | |||
| Isp2 | 3.37 (4.7 × 10−8) | 3.50 (1.3 × 10−29) | |||
| 1e large subunit | 3.10 (5.3 × 10−20) | 3.17 (4.3 × 10−12) | |||
| Type 3b | 4Fe-S | 0.82 (2.0 × 10−2) | |||
| NAD(P)H-flavin reductase | 1.11 (4.5 × 10−2) | ||||
| 3b small subunit | 1.26 (2.4 × 10−2) | ||||
a
Proteins on the 1e and 3b contig that did not show any significant differential transcript abundance are not included.
b
Comparison of transcript levels in the presence of H2 (numerator) or ΣH2S (denominator), under either low or high O2 concentrations.
c
Comparison of transcript levels in the presence of low (numerator) or high (denominator) concentrations of O2, when either H2 or ΣH2S was provided.
d
β is the log2 fold change relative to the treatment indicated in the denominator of the compared treatments (a/b). qval is the P adjusted value with a cutoff of 0.05.