TABLE 1.
Naturally circulating viruses sequenced in this study
| Sample | Collection
yr |
Collection
country |
Host | Virus
type |
Consensus
accession no. |
SRA accession no.a |
|---|---|---|---|---|---|---|
| CPV12 | 1978 | USA | Dog | CPV-2 | MN451655 | SAMN12739316 |
| CPV6 | 1979 | USA | Dog | CPV-2 | MN451653 | SAMN12739317 |
| CPV9 | 1979 | USA | Dog | CPV-2 | MN451654 | SAMN12739318 |
| CPV5b | 1980 | USA | Dog | CPV-2 | EU659116.1 | SAMN12739319 |
| CPV63 | 1980 | USA | Dog | CPV-2 | MN451668 | SAMN12739320 |
| RDPV122 | 1980 | Finland | Raccoon dog | CPV-2 | MN451693 | SAMN12739321 |
| RDPV123 | 1980 | Finland | Raccoon dog | CPV-2 | MN451694 | SAMN12739322 |
| CPV13b | 1981 | USA | Dog | CPV-2a | EU659118 | SAMN12739323 |
| CPV81 | 1982 | Australia | Dog | CPV-2a | MN451669 | SAMN12739324 |
| BFPV | 1983 | Finland | Blue fox | FPV | MN451652 | SAMN12739325 |
| CPV27 | 1983 | USA | Dog | CPV-2a | MN451656 | SAMN12739326 |
| CPV29 | 1983 | USA | Dog | CPV-2a | MN451657 | SAMN12739327 |
| CPV30 | 1983 | USA | Dog | CPV-2a | MN451658 | SAMN12739328 |
| CPV31 | 1983 | USA | Dog | CPV-2a | MN451659 | SAMN12739329 |
| CPV33 | 1983 | USA | Dog | CPV-2a | MN451660 | SAMN12739330 |
| CPV58 | 1983 | France | Dog | CPV-2a | MN451667 | SAMN12739331 |
| CPV35 | 1984 | USA | Dog | CPV-2a | MN451661 | SAMN12739332 |
| CPV36 | 1984 | USA | Dog | CPV-2a | MN451662 | SAMN12739333 |
| CPV39 | 1984 | USA | Dog | CPV-2a | MN451663 | SAMN12739334 |
| CPV54 | 1984 | France | Dog | CPV-2a | MN451666 | SAMN12739335 |
| CPV48 | 1985 | USA | Dog | CPV-2 | MN451664 | SAMN12739336 |
| CPV87 | 1985 | Australia | Dog | CPV-2a | MN451670 | SAMN12739337 |
| CPV50 | 1986 | USA | Dog | CPV-2 | MN451665 | SAMN12739338 |
| RDPV124 | 1986 | Finland | Raccoon dog | CPV-2 | MN451695 | SAMN12739339 |
| CPV220 | 1993 | USA | Dog | CPV-2a | MN451671 | NA |
| CPV305 | 1993 | USA | Dog | CPV-2a | MN451672 | SAMN12739340 |
| CPV307 | 1993 | USA | Red wolf | CPV-2a | MN451673 | SAMN12739341 |
| CPV353 | 1996 | USA | Dog | CPV-2a | MN451674 | SAMN12739342 |
| CPV604 | 2007 | USA | Dog | CPV-2a | MN451677 | SAMN12739343 |
| RACCPV1 | 2009 | USA | Raccoon | CPV-2a | MN451691 | SAMN12739344 |
| CPV617c | 2011 | USA | Dog | CPV-2a | MN451690 | SAMN12739350 to SAMN12739357 |
| RACFPV1 | 2011 | USA | Raccoon | FPV | MN451692 | SAMN12739345 |
| CPV606 | 2014 | USA | Dog | CPV-2a | MN451679 | SAMN12739346 |
| CPV601 | 2016 | USA | Dog | CPV-2a | MN451675 | SAMN12739347 |
| CPV603 | 2017 | USA | Dog | CPV-2a | MN451676 | SAMN12739348 |
| CPV605 | 2018 | Nigeria | Dog | CPV-2a | MN451678 | SAMN12739349 |
| CPV607 | 2018 | Nigeria | Dog | CPV-2a | MN451680 | NA |
| CPV608 | 2018 | Nigeria | Dog | CPV-2a | MN451681 | NA |
| CPV609 | 2018 | Nigeria | Dog | CPV-2a | MN451682 | NA |
| CPV610 | 2018 | Nigeria | Dog | CPV-2a | MN451683 | NA |
| CPV614 | 2018 | Nigeria | Dog | CPV-2a | MN451687 | NA |
| CPV615 | 2018 | Nigeria | Dog | CPV-2a | MN451688 | NA |
| CPV616 | 2018 | Nigeria | Dog | CPV-2a | MN451689 | NA |
| CPV611 | 2019 | USA | Dog | CPV-2a | MN451684 | NA |
| CPV612 | 2019 | USA | Dog | CPV-2a | MN451685 | NA |
| CPV613 | 2019 | USA | Dog | CPV-2a | MN451686 | NA |
a
SRA accession numbers are listed for deep-sequenced samples. NA, not available.
b
Sample previously sequenced (consensus level) in another study and deep sequenced in this study.
c
Multiple tissue specimens sequenced from single individual (see Results and Fig. 5).