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. 2019 Dec 16;20:278. doi: 10.1186/s13059-019-1910-1

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Sensitivity and precision of Scallop, StringTie2, and StringTie2 with super-reads (StringTie2 + SR) on simulated human short-read data, containing 150 million 75-bp paired-end reads. Only those transcripts that were completely covered by input reads were used in computing accuracy