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. 2019 Dec 4;4:22. Originally published 2019 Feb 5. [Version 2] doi: 10.12688/wellcomeopenres.15090.2

Table 1. Example of genomic variant sharing.

Variant 1 Variant 2
Variant Standardised description of variant, including
genomic coordinates
Standardised description of variant, including
genomic coordinates
Gene e.g. MYH7 e.g. MYH7
Genotype Heterozygous Heterozygous
Phenotype Hypertrophic cardiomyopathy Hypertrophic cardiomyopathy
ACMG/AMP variant-level
evidence 55
PS1 – a different variant at the same position has
previously been established to be pathogenic
PM1 – occurs in the head of the protein (a functional
domain with high probability pathogenicity)
PM2 – absent from the general population
PP3 – computational evidence suggests deleterious
effect on gene product
PM1 – occurs in the head of the protein (a functional
domain with high probability pathogenicity)
PM2 – absent from the general population
PP3 – computational evidence suggests deleterious
effect on gene product
Interpretation (based on
public data)
Likely pathogenic Variant of uncertain significance
Aggregated case-level
evidence
Observed in 1/10,000 individuals referred with
diagnosis of HCM
Lab A – variant observed in 2/3,000 total
cardiomyopathy patients sequenced
Lab B – 2/4,000
Lab C – 1/3,000
Lab D – 1/1,000 patients
Interpretation (with
variant sharing)
Likely pathogenic Likely pathogenic