Table 1. Example of genomic variant sharing.
| Variant 1 | Variant 2 | |
|---|---|---|
| Variant | Standardised description of variant, including
genomic coordinates |
Standardised description of variant, including
genomic coordinates |
| Gene | e.g. MYH7 | e.g. MYH7 |
| Genotype | Heterozygous | Heterozygous |
| Phenotype | Hypertrophic cardiomyopathy | Hypertrophic cardiomyopathy |
|
ACMG/AMP variant-level
evidence 55 |
PS1 – a different variant at the same position has
previously been established to be pathogenic PM1 – occurs in the head of the protein (a functional domain with high probability pathogenicity) PM2 – absent from the general population PP3 – computational evidence suggests deleterious effect on gene product |
PM1 – occurs in the head of the protein (a functional
domain with high probability pathogenicity) PM2 – absent from the general population PP3 – computational evidence suggests deleterious effect on gene product |
|
Interpretation (based on
public data) |
Likely pathogenic | Variant of uncertain significance |
|
Aggregated case-level
evidence |
Observed in 1/10,000 individuals referred with
diagnosis of HCM |
Lab A – variant observed in 2/3,000 total
cardiomyopathy patients sequenced Lab B – 2/4,000 Lab C – 1/3,000 Lab D – 1/1,000 patients |
|
Interpretation (with
variant sharing) |
Likely pathogenic | Likely pathogenic |