Table 3.

SNPs identified with genome‐wide association studies and associated with the number of primary infection foci (IF) induced by PVY‐GFP and PVY accumulation (VA) in pepper.

Trait	Chromosome number	Position (bp)	CMLM		MLMM
			−log10(p)	R 2(%)	−log10(p)	R 2(%)
IF	4	340 333	4.80	6.8	8.55	13.5
	4	1 151 249	5.53	8.1	NS	NS
	6	234 143 013	9.62	15.4	14.21	13.9
	6	234 142 995	9.56	15.3	NS	NS
	9	58 056 303	NS	NS	6.16	7.8
	12	235 513 719	5.29	7.7	NS	NS
VA	4	1 151 249	5.53	8.0	6.55	11.0
	4	1 151 254	5.36	7.7	NS	NS
	6	234 143 013	4.97	7.1	NS	NS
	6	234 142 995	4.77	6.8	NS	NS

CMLM, compressed mixed linear model; MLMM, multilocus mixed‐model; NS, not statistically significant.