| ID |
Identifier |
Identifier of feature used for mapping read counts against |
| AveExpr |
Average Expression |
Average of edgeR, DESeq2 and voom reported Average Expression |
| LogFC |
Log Fold-Change, also known as a log-ratio |
Average of edgeR, DESeq2 and voom logFC |
| LogFC_sd |
Log Fold-Change standard deviation |
Standard Deviation of LogFC reported by edgeR, DESeq2 and voom |
| edger_adj_p |
edgeR p-value |
Adjusted for multiple hypotheses using benjamini and hochberg (default) |
| deseq_adj_p |
DESeq2 p-value |
Adjusted for multiple hypotheses using benjamini and hochberg (default) |
| voom_adj_p |
voom p-value |
Adjusted for multiple hypotheses using benjamini and hochberg (default) |
| edger_rank |
rank of the p-value reported by edgeR |
smallest rank is most significant (or smallest p-value) reported |
| deseq_rank |
rank of the p-value reported by DESeq2 |
smallest rank is most significant (or smallest p-value) reported |
| voom_rank |
rank of the p-value obtained by voom |
smallest rank is most significant (or smallest p-value) reported |
| rank_sum |
Sum of ranks |
Combination of ranks from edger_rank, voom_rank and deseq_rank. Results are orderd by this sum, which represents the order of the most stable reported p-values |
| p_intersect |
Largest p-value observed |
This represents the intersect when a threshold is set on the p_intersect column |
| p_union |
Smallest p-value observed |
This represents the union when a threshold is set on the p_union column |
| genename |
Extended gene name |
e.g., alpha-L-fucosidase 2 corresponds to FUCA2 |
| symbol |
Gene symbol |
e.g., FUCA2 |
| kegg |
kegg pathway identifier |
For further analyses of pathways where annotated |
| coords |
chromosomal coordinates |
e.g., chr6:143494811-143511690 |
| strand |
transcript strand |
forward strand is +, reverse strand is - |
| width |
transcript width |
Reported in base pairs (bp) (transcript start to end) (e.g., 16,880 bp) |
