Table 1.
Stage, step | MAP-AWSa | Traditional methods | |||
Upstream stage |
|
|
|||
|
Data import | 4 s | 1 min 48 s | ||
|
Quality control (ie, Dada2) | 3 h 22 min 27 s | 6 h 38 min 49 s | ||
|
Phylogeny | 32 s | <1 min | ||
Downstream stage |
|
|
|||
|
Taxonomy analysis | 1 min 23 s | 3 min 27 s | ||
|
Diversity analysis | 2 s | 8 s |
aMAP-AWS: Microbiome Data Analysis Pipeline Using Amazon Web Services.