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. 2019 Nov 11;7(4):e14667. doi: 10.2196/14667

Table 1.

Running Time for the Gut Microbiome Sample Analysis (n=50).

Stage, step MAP-AWSa Traditional methods
Upstream stage


Data import 4 s 1 min 48 s

Quality control (ie, Dada2) 3 h 22 min 27 s 6 h 38 min 49 s

Phylogeny 32 s <1 min
Downstream stage


Taxonomy analysis 1 min 23 s 3 min 27 s

Diversity analysis 2 s 8 s

aMAP-AWS: Microbiome Data Analysis Pipeline Using Amazon Web Services.