Table 2. Annotation of PHE1 ChIP-seq peaks within genomic features of interest.
Annotation for each individual replicate, as well as for common peaks, is presented. For target gene analysis, only common peaks located 1.5 kb upstream to 0.5 kb downstream of the TSS were considered (3rd row).
| Sample | Total no. of peaks | No. of peaks in −1.5 kb to +0.5 kb window around TSS | Average distance to nearest TSS (bp) | Associated genomic feature (% of peaks) | No. of targeted genes | ||
|---|---|---|---|---|---|---|---|
| Promoter | Gene body | Intergenic | |||||
| Replicate 1 peaks | 2818 | 2182 | 445 | 88.6 | 4.7 | 6.6 | 1985 |
| Replicate 2 peaks | 4521 | 3508 | 600 | 86.6 | 3.5 | 9.9 | 2971 |
| Common peaks (PHE1 binding sites) | 2494 | 1995 | 430 | 89.6 | 4.6 | 5.8 | 1694 |