Table 1.
Relative abundance of SEED categories Level 1 in control and L. paracasei (LpC)-treated reactor mimicking proximal colon section (model 1).
| Day | 16 | 18 | 24 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Relative abundance (%) | CR | LpC | Ratio LpC/CR | CR | LpC | Ratio LpC/CR | CR | LpC | Ratio LpC/CR |
| Amino acids and derivatives | 8.22 | 8.13 | 0.99 | 8.32 | 8.28 | 1.00 | 8.49 | 8.53 | 1.01 |
| Carbohydrates | 19.48 | 19.22 | 0.99 | 19.57 | 20.36 | 1.04 | 20.78 | 20.86 | 1.00 |
| Cell division and cell cycle | 1.03 | 0.97 | 0.94 | 1.01 | 0.89 | 0.88 | 0.89 | 0.91 | 1.02 |
| Cell wall and capsule | 2.09 | 2.16 | 1.03 | 1.93 | 1.91 | 0.99 | 2.08 | 1.84 | 0.88 |
| Clustering-based subsystems | 13.66 | 14.17 | 1.04 | 14.13 | 14.00 | 0.99 | 14.05 | 13.71 | 0.98 |
| Cofactors, Vitamins, Prosthetic Groups, Pigments | 4.97 | 5.20 | 1.05 | 4.63 | 4.76 | 1.03 | 4.88 | 4.77 | 0.98 |
| DNA metabolism | 2.11 | 2.16 | 1.03 | 2.14 | 1.90 | 0.89 | 1.90 | 1.98 | 1.04 |
| Dormancy and sporulation | 0.16 | 0.13 | 0.81 | 0.15 | 0.17 | 1.13 | 0.14 | 0.12 | 0.81 |
| Fatty Acids, Lipids, and Isoprenoids | 2.99 | 3.11 | 1.04 | 2.59 | 2.65 | 1.02 | 2.55 | 2.48 | 0.97 |
| Iron acquisition and metabolism | 0.34 | 0.28 | 0.80 | 0.34 | 0.27 | 0.79 | 0.37 | 0.37 | 1.02 |
| Membrane Transport | 2.30 | 2.56 | 1.11 | 2.21 | 2.38 | 1.08 | 2.35 | 2.71 | 1.15 |
| Metabolism of aromatic compounds | 1.17 | 1.45 | 1.24 | 1.26 | 1.26 | 1.00 | 1.34 | 1.35 | 1.01 |
| Miscellaneous | 5.36 | 5.27 | 0.98 | 5.53 | 5.62 | 1.02 | 5.28 | 5.20 | 0.98 |
| Motility and chemotaxis | 0.58 | 0.86 | 1.47 | 0.61 | 0.62 | 1.01 | 0.62 | 0.53 | 0.86 |
| Nitrogen metabolism | 0.43 | 0.24 | 0.55 | 0.23 | 0.22 | 0.99 | 0.26 | 0.21 | 0.83 |
| Nucleosides and nucleotides | 2.64 | 2.48 | 0.94 | 2.73 | 2.73 | 1.00 | 2.80 | 2.55 | 0.91 |
| Phages, Prophages, Transposable elements, Plasmids | 1.13 | 1.08 | 0.95 | 1.05 | 0.97 | 0.92 | 1.13 | 1.14 | 1.01 |
| Phosphorus metabolism | 0.13 | 0.12 | 0.98 | 0.11 | 0.11 | 0.94 | 0.13 | 0.13 | 0.99 |
| Photosynthesis | 0.01 | 0.02 | 1.35 | 0.01 | 0.01 | 0.95 | 0.01 | 0.01 | 1.13 |
| Potassium metabolism | 0.10 | 0.08 | 0.85 | 0.11 | 0.08 | 0.76 | 0.10 | 0.11 | 1.13 |
| Protein metabolism | 19.88 | 19.27 | 0.97 | 20.32 | 20.17 | 0.99 | 19.05 | 19.51 | 1.02 |
| RNA metabolism | 3.81 | 3.57 | 0.94 | 3.75 | 3.52 | 0.94 | 3.42 | 3.40 | 0.99 |
| Regulation and cell signaling | 0.82 | 0.86 | 1.05 | 0.75 | 0.76 | 1.01 | 0.80 | 0.80 | 0.99 |
| Respiration | 2.21 | 2.12 | 0.96 | 2.16 | 2.16 | 1.00 | 2.28 | 2.30 | 1.01 |
| Secondary metabolism | 0.61 | 0.75 | 1.23 | 0.76 | 0.68 | 0.90 | 0.75 | 0.74 | 0.99 |
| Stress response | 2.26 | 2.18 | 0.97 | 2.15 | 2.04 | 0.95 | 1.92 | 2.18 | 1.13 |
| Sulfur metabolism | 0.35 | 0.34 | 0.97 | 0.33 | 0.35 | 1.05 | 0.40 | 0.37 | 0.93 |
| Virulence, Disease and Defense | 1.15 | 1.22 | 1.06 | 1.12 | 1.12 | 1.00 | 1.22 | 1.19 | 0.97 |
In bold: SEED categories that are increased in PC_LpC relative to PC_CR (p < 0.05).