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. 2019 Dec 18;6:138. doi: 10.1038/s41438-019-0227-2

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — a Venn diagram of shared orthologous gene families in persimmon, Arabidopsis thaliana, Malus domestica and Vitis vinifera. The number of gene families is listed for each component. b Phylogenetic tree constructed from persimmon single-copy gene families with 13 other species, including Vitis vinifera (Vvinifera_145_Genoscope), Actinidia chinensis (v1.0), Musa acuminata, Solanum lycopersicum (SL2.40), Diospyros oleifera, Citrus sinensis, Glycine max (Soybean_Williams82), Carica papaya, Arabidopsis thaliana (TAIR10), Juglans regia, Fragaria vesca, Prunus persica (v2.0), Pyrus bretschneideri, and Malus domestica (v1.0). The numbers indicate the divergence time. c Distribution of 4DTv distance between syntenic orthologous genes. The red arrow indicates the peak value for persimmon. d Gene family expansion and contraction analysis. Gene family expansions and contractions are indicated by numbers in red and blue, respectively. The gray areas represent the conserved gene families.