TABLE 6.

qPCR primers

Primer name	Sequence	Location g on genome (ori = 0; ter = 1)
SJO1152	CGTTGATAGGAACTAGTAGGGA	ori forward (right arm)
SJO1153	AGCATTTCGCTCAAGGATG	ori reverse (right arm)
SJO1232	GGAATTTCTTTCTCAGGAGAACATTTG	0.2 forward (right arm)
SJO1233	TCTTTATAACGCAGGCATACGG	0.2 reverse (right arm)
SJO1167	CAGTTCGAGCGAAACGATAGA	0.4 forward (right arm)
SJO1168	CGCCACTTTCTCCCTCATAC	0.4 reverse (right arm)
SJO1136	AGAGATGGGTACGATTGTTTG	0.73 forward (right arm)
SJO1137	TTGTCCGCAGCAAGTTC	0.73 reverse (right arm)
SJO1138	TTAACTCGGACATCTTCATCAG	ter forward
SJO1139	CAAGGATCAGGAGCAGTTTAT	ter reverse
SJO1140	CAGTTCTGCGTTTAGCTGTA	−0.74 forward (left arm)
SJO1141	TTCGGTCATTCTTGTGATAGTT	−0.74 reverse (left arm)
SJO1175	TCAAACACATACTTACTCGGATACA	−0.41 forward (left arm)
SJO1176	CTTGCAGGATTTGAAAGGGAAA	−0.41 reverse (left arm)
SJO1177	CATAACCGGGTACTGAGGAAA	−0.22 forward (left arm)
SJO1178	TCGGATTACGGAAGTTGAAGAG	−0.22 reverse (left arm)
SJO1179	CACTGCCAGCATATTGTTTATCG	ori forward (left arm)
SJO1180	GAATGGTTGATCGGTATGGCTA	ori reverse (left arm)