Table 5.

Transcription factors (TFs) that are significantly (p < 0.05) and highly associated to predicted CREs.

CRE	Pub_Locus of TF	TF Class	Correlation (r)	T Score	p-Value
Os_1K_004	LOC_Os04g28090 *	MYB	0.63	12.25	9.87 × 10−27
	LOC_Os03g12120	NAC	0.59	10.77	5.06 × 10−22
	LOC_Os06g41384	C3H	0.58	9.73	2.57 × 10−18
	LOC_Os04g40060	FAR1	0.54	9.56	2.45 × 10−18
	LOC_Os04g35800	C3H	0.54	8.99	1.94 × 10−16
	LOC_Os02g06370	Whirly	0.54	8.92	3.11 × 10−16
	LOC_Os02g33560 *	bZIP	0.51	8.88	2.45 × 10−16
	LOC_Os06g12400	HB−PHD	0.51	8.50	4.30 × 10−15
	LOC_Os03g05480	C2H2	0.51	8.81	3.96 × 10−16
	LOC_Os08g19590	HD−ZIP	0.51	8.26	2.24 × 10−14
	LOC_Os03g05690	C2H2	0.50	8.48	3.57 × 10−15
	LOC_Os02g05450 *	HB−other	0.50	8.16	3.52 × 10−14
	LOC_Os07g44640	C2H2	0.50	8.42	5.39 × 10−15
OS_1K_001	LOC_Os02g43330 *	HD−ZIP	0.59	10.17	8.75 × 10−20
	LOC_Os03g60560	C2H2	0.52	9.03	8.41 × 10−17
G−box	LOC_Os03g60080 *	NAC	0.58	9.93	3.98 × 10−19
	LOC_Os02g43330 *	HD−ZIP	0.56	9.61	3.56 × 10−18
	LOC_Os01g50940	bHLH	0.55	8.95	3.65 × 10−16
	LOC_Os01g64360	MYB	0.52	8.40	1.11 × 10−14
	LOC_Os03g60560	C2H2	0.52	9.11	4.89 × 10−17
ABRE_M4	LOC_Os02g43330	HD−ZIP	0.54	8.97	2.38 × 10−16
	LOC_Os01g50940	bHLH	0.53	8.51	5.88 × 10−15
	LOC_Os03g60080	NAC	0.52	8.63	1.98 × 10−15
ABRE_M3	LOC_Os02g43330 *	HD−ZIP	0.62	11.13	1.26 × 10−22
	LOC_Os03g60080	NAC	0.55	9.35	1.90 × 10−17
	LOC_Os03g60560	C2H2	0.55	9.80	4.38 × 10−19
	LOC_Os01g50940	bHLH	0.54	8.76	1.25 × 10−15
	LOC_Os05g37060	MYB	0.50	8.19	2.91 × 10−14
	LOC_Os05g49420 *	bZIP	0.50	8.08	6.38 × 10−14
ABAVP1	LOC_Os05g34830	NAC	0.50	7.77	5.37 × 10−13
	LOC_Os10g17630	B3	−0.50	−8.30	1.31 × 10−14
CE_M5	LOC_Os01g64360 *	MYB	0.67	12.43	3.29 × 10−26
	LOC_Os01g50940 *	bHLH	0.66	11.82	2.18 × 10−24
	LOC_Os07g36170	GRAS	0.64	12.42	2.85 × 10−27
	LOC_Os03g60560	C2H2	0.62	11.75	4.18 × 10−25
	LOC_Os02g26430	WRKY	0.60	10.64	3.37 × 10−21
	LOC_Os03g12370	HSF	0.59	11.02	6.31 × 10−23
	LOC_Os06g44010	WRKY	0.58	10.01	2.73 × 10−19
	LOC_Os02g52670	ERF	0.57	10.36	9.37 × 10−21
	LOC_Os03g60080	NAC	0.57	9.79	1.04 × 10−18
	LOC_Os01g63980 *	C2H2	0.57	10.19	3.33 × 10−20
	LOC_Os09g32040	NAC	0.56	9.61	3.5 × 10−18
	LOC_Os05g41780	ERF	0.55	9.84	3.25 × 10−19
	LOC_Os01g07120	ERF	0.55	9.39	1.26 × 10−17
	LOC_Os03g02160	C3H	0.53	9.45	4.7 × 10−18
	LOC_Os03g32230 *	C2H2	0.53	9.37	8.4 × 10−18
	LOC_Os01g15640	NAC	0.53	9.08	7.76 × 10−17
	LOC_Os07g39470	GRAS	0.53	9.11	6.17 × 10−17
	LOC_Os05g07120	bHLH	0.53	8.92	2.38 × 10−16
	LOC_Os01g58420	ERF	0.52	9.22	2.23 × 10−17
	LOC_Os04g43680	MYB	0.52	9.27	1.49 × 10−17
	LOC_Os02g43790	ERF	0.52	8.51	4.4 × 10−15
	LOC_Os03g55080 *	WRKY	0.51	8.91	1.83 × 10−16
	LOC_Os07g07974 *	CPP	0.51	8.32	1.45 × 10−14
	LOC_Os05g49420 *	bZIP	0.50	8.13	4.68 × 10−14
W−box	LOC_Os04g43680 *	MYB	0.58	10.62	1.18 × 10−21
	LOC_Os03g32230	C2H2	0.51	8.95	1.42 × 10−16
	LOC_Os05g03760 *	C3H	0.51	8.29	1.63 × 10−14
	LOC_Os01g14440	WRKY	0.51	8.74	5.68 × 10−16
OS_5U_002	LOC_Os08g15050	CO−like	0.57	9.67	2.21 × 10−18
	LOC_Os09g16510 *	WRKY	0.51	8.38	9.74 × 10−15
RY_motif	LOC_Os04g40060	FAR1	−0.51	−8.82	3.53 × 10−16
	LOC_Os02g05450 *	HB−other	−0.52	−8.63	1.86 × 10−15
	LOC_Os03g27390	bHLH	−0.53	−9.37	8.93 × 10−18
	LOC_Os03g12120	NAC	−0.60	−11.26	1.48 × 10−23

Significance at p < 0.05, correlation r ≥ 0.50 or r ≤ –0.50. * indicates that the presence of CRE in the 1-kb upstream promoter sequence of TFs.