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Clustering of cases by WGS in analysed samples using five distinct international WGS data analysis pipelines (n = 535)
cgMLST: core genome multilocus sequence typing; MTB: Mycobacterium tuberculosis; RIVM: National Institute for Public Health and the Environment; SNP: single nucleotide polymorphism; SSI: Statens Serum Institut; VNTR: variable number of tandem repeat; WGS: whole genome sequencing.
WGS clusters were defined using a maximum pairwise distance of 12 SNPs/alleles.
